############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HCABrowser ### ############################################################################## ############################################################################## * checking for file ‘HCABrowser/DESCRIPTION’ ... OK * preparing ‘HCABrowser’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HCABrowser.Rmd’ using rmarkdown Loading required package: dplyr Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: AnVIL Warning: Package 'HCABrowser' is deprecated and will be removed from Bioconductor version 3.14 Warning in open.connection(url0) : URL 'https://dss.data.humancellatlas.org/v1/swagger.json': status was 'Couldn't resolve host name' Quitting from lines 105-111 (HCABrowser.Rmd) Error: processing vignette 'HCABrowser.Rmd' failed with diagnostics: 'url' does not appear to be JSON or YAML --- failed re-building ‘HCABrowser.Rmd’ SUMMARY: processing the following file failed: ‘HCABrowser.Rmd’ Error: Vignette re-building failed. Execution halted