############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneGeneInteR_1.18.0.tar.gz && rm -rf GeneGeneInteR.buildbin-libdir && mkdir GeneGeneInteR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneGeneInteR.buildbin-libdir GeneGeneInteR_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneGeneInteR_1.18.0.zip && rm GeneGeneInteR_1.18.0.tar.gz GeneGeneInteR_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 492k 3 15989 0 0 135k 0 0:00:03 --:--:-- 0:00:03 134k 100 492k 100 492k 0 0 1297k 0 --:--:-- --:--:-- --:--:-- 1295k install for i386 * installing *source* package 'GeneGeneInteR' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c chclust.cpp -o chclust.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GeneGeneInteR.dll tmp.def chclust.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/GeneGeneInteR.buildbin-libdir/00LOCK-GeneGeneInteR/00new/GeneGeneInteR/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GeneGeneInteR' finding HTML links ... done CCA.test html CLD.test html GBIGM.test html GGI html KCCA.test html PCA.test html PLSPM.test html data.SNP html gates.test html gene.pair html importFile html imputeSnpMatrix html minP.test html plot.GGInetwork html print.GGItest html selectSnps html snpMatrixScour html summary.GGInetwork html summary.GGItest html tProd.test html tTS.test html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GeneGeneInteR' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c chclust.cpp -o chclust.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GeneGeneInteR.dll tmp.def chclust.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/GeneGeneInteR.buildbin-libdir/GeneGeneInteR/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GeneGeneInteR' as GeneGeneInteR_1.18.0.zip * DONE (GeneGeneInteR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'GeneGeneInteR' successfully unpacked and MD5 sums checked