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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneBreak_1.22.0.tar.gz && rm -rf GeneBreak.buildbin-libdir && mkdir GeneBreak.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneBreak.buildbin-libdir GeneBreak_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneBreak_1.22.0.zip && rm GeneBreak_1.22.0.tar.gz GeneBreak_1.22.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 4105k    3  162k    0     0   709k      0  0:00:05 --:--:--  0:00:05  708k
 76 4105k   76 3137k    0     0  2572k      0  0:00:01  0:00:01 --:--:-- 2571k
100 4105k  100 4105k    0     0  2764k      0  0:00:01  0:00:01 --:--:-- 2764k

install for i386

* installing *source* package 'GeneBreak' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'segmentData' in package 'GeneBreak'
** help
*** installing help indices
  converting help for package 'GeneBreak'
    finding HTML links ... done
    CopyNumberBreakPointGenes-class         html  
    CopyNumberBreakPoints-class             html  
    GeneBreak                               html  
    accessOptions-CopyNumberBreakPoints-method
                                            html  
    addGeneAnnotation-CopyNumberBreakPoints-method
                                            html  
    bpFilter-CopyNumberBreakPoints-method   html  
    bpGenes-CopyNumberBreakPointGenes-method
                                            html  
    bpPlot-CopyNumberBreakPoints-method     html  
    bpStats-CopyNumberBreakPoints-method    html  
    breakpointData-CopyNumberBreakPoints-method
                                            html  
    breakpointsPerGene-CopyNumberBreakPointGenes-method
                                            html  
    callData-CopyNumberBreakPoints-method   html  
    copynumber.data.chr18                   html  
    copynumber.data.chr20                   html  
    copynumber.data.chr21                   html  
    ens.gene.ann.hg18                       html  
    ens.gene.ann.hg19                       html  
    ens.gene.ann.hg38                       html  
    featureChromosomes-CopyNumberBreakPoints-method
                                            html  
    featureInfo-CopyNumberBreakPoints-method
                                            html  
    featuresPerGene-CopyNumberBreakPointGenes-method
                                            html  
    geneChromosomes-CopyNumberBreakPointGenes-method
                                            html  
    geneInfo-CopyNumberBreakPointGenes-method
                                            html  
    getBreakpoints                          html  
    namesFeatures-CopyNumberBreakPoints-method
                                            html  
    recurrentGenes-CopyNumberBreakPointGenes-method
                                            html  
    sampleNames-CopyNumberBreakPoints-method
                                            html  
    segmentData-CopyNumberBreakPoints-method
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneBreak' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneBreak' as GeneBreak_1.22.0.zip
* DONE (GeneBreak)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GeneBreak' successfully unpacked and MD5 sums checked