############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneAccord_1.10.0.tar.gz && rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneAccord_1.10.0.zip && rm GeneAccord_1.10.0.tar.gz GeneAccord_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 50 2735k 50 1377k 0 0 1531k 0 0:00:01 --:--:-- 0:00:01 1530k 100 2735k 100 2735k 0 0 1848k 0 0:00:01 0:00:01 --:--:-- 1849k install for i386 * installing *source* package 'GeneAccord' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GeneAccord' finding HTML links ... done GeneAccord html all_genes_tbl html avg_rates_m html build_null_test_statistic html clone_tbl_all_pats_all_trees html compute_rates_clon_excl html compute_test_stat_avg_rate html convert_ensembl_to_reactome_pw_tbl html create_ensembl_gene_tbl_hg html create_tbl_ent_clones html create_tbl_tree_collection html ecdf_list html ecdf_lr_test_clon_excl_avg_rate html ensembl_to_hgnc html ensembl_to_reactome html ensg_reactome_path_map html ensmusg_reactome_path_map html extract_num_clones_tbl html generate_ecdf_test_stat html generate_test_stat_hist html get_hist_clon_excl html get_hist_clon_excl_this_pat_this_pair html get_rate_diff_branch_ent_pair html heatmap_clones_gene_pat html hgnc_to_ensembl html is_diff_branch_ent_pair html list_of_clon_excl_all_pats html list_of_num_trees_all_pats html map_pairs_to_hgnc_symbols html merge_clones_identical_ents html pairs_in_patients_hist html plot_ecdf_test_stat html plot_rates_clon_excl html take_pairs_and_get_patients html vis_pval_distr_num_pat html write_res_pairs_to_disk html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GeneAccord' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GeneAccord' as GeneAccord_1.10.0.zip * DONE (GeneAccord) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'GeneAccord' successfully unpacked and MD5 sums checked