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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GAPGOM_1.8.0.tar.gz && rm -rf GAPGOM.buildbin-libdir && mkdir GAPGOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GAPGOM.buildbin-libdir GAPGOM_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GAPGOM_1.8.0.zip && rm GAPGOM_1.8.0.tar.gz GAPGOM_1.8.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  751k  100  751k    0     0  2191k      0 --:--:-- --:--:-- --:--:-- 2197k

install for i386

* installing *source* package 'GAPGOM' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GAPGOM'
    finding HTML links ... done
    ambiguous_functions                     html  
    dag_funcs                               html  
    dot-enrichment_analysis                 html  
    dot-entrezraw_to_entrez                 html  
    dot-ext_id_to_term_id                   html  
    dot-fantom_filter_entrez                html  
    dot-generate_translation_df             html  
    dot-get_package_version                 html  
    dot-go_ids_lookup                       html  
    dot-organism_to_species_lib             html  
    dot-prepare_score_df                    html  
    dot-prepare_score_matrix_topoicsim      html  
    dot-prepare_variables_topoicsim         html  
    dot-resolve_genes_unique_gos            html  
    dot-resolve_keys_col                    html  
    dot-set_identical_items                 html  
    dot-set_values                          html  
    dot-term_id_to_ext_id                   html  
    dot-topo_ic_sim_g1g2                    html  
    dot-topo_ic_sim_geneset                 html  
    dot-topo_ic_sim_titj                    html  
    dot-unique_combos                       html  
    expression_prediction                   html  
    expression_semantic_scoring             html  
    expset                                  html  
    fantom_download                         html  
    fantom_load_raw                         html  
    fantom_to_expset                        html  
    geometrical_measures                    html  
    glb_checks                              html  
    id_translation_df                       html  
    misc_functions                          html  
    set_go_data                             html  
    topo_ic_sim_genes                       html  
    topo_ic_sim_term                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GAPGOM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GAPGOM' as GAPGOM_1.8.0.zip
* DONE (GAPGOM)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GAPGOM' successfully unpacked and MD5 sums checked