############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/FitHiC_1.18.0.tar.gz && rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FitHiC.buildbin-libdir FitHiC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL FitHiC_1.18.0.zip && rm FitHiC_1.18.0.tar.gz FitHiC_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 26.6M 0 221k 0 0 718k 0 0:00:37 --:--:-- 0:00:37 719k 37 26.6M 37 9.8M 0 0 7749k 0 0:00:03 0:00:01 0:00:02 7747k 77 26.6M 77 20.6M 0 0 9164k 0 0:00:02 0:00:02 --:--:-- 9163k 100 26.6M 100 26.6M 0 0 9569k 0 0:00:02 0:00:02 --:--:-- 9569k install for i386 * installing *source* package 'FitHiC' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c FitHiC_init.c -o FitHiC_init.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c helper.cpp -o helper.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o FitHiC.dll tmp.def FitHiC_init.o RcppExports.o helper.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/FitHiC.buildbin-libdir/00LOCK-FitHiC/00new/FitHiC/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'FitHiC' finding HTML links ... done FitHiC html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'FitHiC' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c FitHiC_init.c -o FitHiC_init.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c helper.cpp -o helper.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o FitHiC.dll tmp.def FitHiC_init.o RcppExports.o helper.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/FitHiC.buildbin-libdir/FitHiC/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'FitHiC' as FitHiC_1.18.0.zip * DONE (FitHiC) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'FitHiC' successfully unpacked and MD5 sums checked