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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Dune.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Dune_1.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/Dune.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Dune/DESCRIPTION' ... OK
* this is package 'Dune' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Dune' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
package 'methods' is used but not declared
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.metricTrend: no visible binding for global variable '.'
.metricTrend: no visible binding for global variable 'step'
.metricTrend: no visible binding for global variable 'change'
.metricTrend: no visible binding for global variable 'value'
.plotMetric: no visible binding for global variable 'label2'
.plotMetric: no visible binding for global variable 'metric'
.plotMetric: no visible binding for global variable 'label1'
ARIImp : f: no visible binding for global variable 'cells'
ConfusionEvolution : <anonymous>: no visible binding for global
  variable 'Freq'
ConfusionEvolution : <anonymous>: no visible binding for global
  variable 'total_x'
ConfusionEvolution : <anonymous>: no visible binding for global
  variable 'total_y'
ConfusionEvolution: no visible binding for global variable 'overlap'
ConfusionEvolution: no visible binding for global variable 'Freq'
ConfusionEvolution: no visible binding for global variable 'step'
ConfusionPlot: no visible binding for global variable 'Freq'
ConfusionPlot: no visible binding for global variable 'total_x'
ConfusionPlot: no visible binding for global variable 'total_y'
ConfusionPlot: no visible binding for global variable 'overlap'
NMIImp : f: no visible binding for global variable 'cells'
intermediateMat: no visible binding for global variable 'cells'
plotPrePost: no visible binding for global variable 'Nb'
Undefined global functions or variables:
  . Freq Nb cells change label1 label2 metric overlap step total_x
  total_y value
Consider adding
  importFrom("stats", "step")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
Dune 6.59   0.02    6.61
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
Dune 6.67      0    6.68
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/Dune.Rcheck/00check.log'
for details.