############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DelayedRandomArray.buildbin-libdir && mkdir DelayedRandomArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedRandomArray.buildbin-libdir DelayedRandomArray_1.0.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'DelayedRandomArray' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c index_server.cpp -o index_server.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c recycle_vector.cpp -o recycle_vector.o recycle_vector.cpp: In function 'Rcpp::NumericVector recycle_vector(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::List)': recycle_vector.cpp:12:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < ndims; ++i){ ~~^~~~~~~ recycle_vector.cpp:21:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'const int' [-Wsign-compare] while (current_pos < limit) { ~~~~~~~~~~~~^~~~~~~ recycle_vector.cpp:37:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < ndims; ++i) { ~~^~~~~~~ recycle_vector.cpp:48:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < ndims; ++i) { ~~^~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sample_standard_uniform.cpp -o sample_standard_uniform.o In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/random.hpp:69, from sample_standard_uniform.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] failed ************ (boost::mpl::not_::************ ^ C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o DelayedRandomArray.dll tmp.def RcppExports.o index_server.o recycle_vector.o sample_standard_uniform.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DelayedRandomArray.buildbin-libdir/00LOCK-DelayedRandomArray/00new/DelayedRandomArray/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DelayedRandomArray' finding HTML links ... done RandomArraySeed-class html finding level-2 HTML links ... done RandomBetaArray-class html RandomBinomArray-class html RandomCauchyArray-class html RandomChisqArray-class html RandomExpArray-class html RandomFArray-class html RandomGammaArray-class html RandomGeomArray-class html RandomHyperArray-class html RandomLnormArray-class html RandomLogisArray-class html RandomNbinomArray-class html RandomNormArray-class html RandomPoisArray-class html RandomTArray-class html RandomUnifArray-class html RandomWeibullArray-class html RandomWilcoxArray-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DelayedRandomArray' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c index_server.cpp -o index_server.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c recycle_vector.cpp -o recycle_vector.o recycle_vector.cpp: In function 'Rcpp::NumericVector recycle_vector(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::List)': recycle_vector.cpp:12:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] for (int i = 0; i < ndims; ++i){ ~~^~~~~~~ recycle_vector.cpp:21:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare] while (current_pos < limit) { ~~~~~~~~~~~~^~~~~~~ recycle_vector.cpp:37:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] for (int i = 0; i < ndims; ++i) { ~~^~~~~~~ recycle_vector.cpp:48:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] for (int i = 0; i < ndims; ++i) { ~~^~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/dqrng/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sample_standard_uniform.cpp -o sample_standard_uniform.o In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/random.hpp:69, from sample_standard_uniform.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] failed ************ (boost::mpl::not_::************ ^ C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o DelayedRandomArray.dll tmp.def RcppExports.o index_server.o recycle_vector.o sample_standard_uniform.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DelayedRandomArray.buildbin-libdir/DelayedRandomArray/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'DelayedRandomArray' as DelayedRandomArray_1.0.0.zip * DONE (DelayedRandomArray)