############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DelayedArray_0.18.0.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.18.0.zip && rm DelayedArray_0.18.0.tar.gz DelayedArray_0.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 50 183k 50 94289 0 0 478k 0 --:--:-- --:--:-- --:--:-- 477k 100 183k 100 183k 0 0 786k 0 --:--:-- --:--:-- --:--:-- 785k install for i386 * installing *source* package 'DelayedArray' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o compress_atomic_vector.c: In function 'C_encode_atomic_vector': compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ compress_atomic_vector.c: In function 'C_decode_atomic_vector': compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ compress_atomic_vector.c: In function 'C_compress_atomic_vector': compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ compress_atomic_vector.c: In function 'C_decompress_atomic_vector': compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sparseMatrix_utils.c -o sparseMatrix_utils.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DelayedArray.buildbin-libdir/00LOCK-DelayedArray/00new/DelayedArray/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'rowsum' in package 'DelayedArray' Creating a new generic function for 'aperm' in package 'DelayedArray' Creating a new generic function for 'apply' in package 'DelayedArray' Creating a new generic function for 'sweep' in package 'DelayedArray' Creating a new generic function for 'scale' in package 'DelayedArray' Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray' Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray' Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray' Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray' Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray' Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray' Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray' Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray' Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray' Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray' Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray' Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray' ** help *** installing help indices converting help for package 'DelayedArray' finding HTML links ... done Array-class html ArrayGrid-class html AutoBlock-global-settings html AutoGrid html ConstantArray-class html DelayedAbind-class html DelayedAperm-class html DelayedArray-class html DelayedArray-stats html DelayedArray-utils html DelayedMatrix-stats html DelayedMatrix-utils html DelayedNaryIsoOp-class html DelayedOp-class html DelayedSetDimnames-class html DelayedSubassign-class html DelayedSubset-class html DelayedUnaryIsoOpStack-class html DelayedUnaryIsoOpWithArgs-class html RleArray-class html RleArraySeed-class html SparseArraySeed-class html SparseArraySeed-utils html array_selection html bind-arrays html blockApply html chunkGrid html extract_array html makeCappedVolumeBox html mapToGrid html read_block html realize html showtree html simplify html sparseMatrix-utils html write_block html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DelayedArray' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o compress_atomic_vector.c: In function 'C_encode_atomic_vector': compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ compress_atomic_vector.c: In function 'C_decode_atomic_vector': compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ compress_atomic_vector.c: In function 'C_compress_atomic_vector': compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ compress_atomic_vector.c: In function 'C_decompress_atomic_vector': compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized] return ans; ^~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sparseMatrix_utils.c -o sparseMatrix_utils.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'DelayedArray' as DelayedArray_0.18.0.zip * DONE (DelayedArray) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'DelayedArray' successfully unpacked and MD5 sums checked