############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DMRcate_2.6.0.tar.gz && rm -rf DMRcate.buildbin-libdir && mkdir DMRcate.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcate.buildbin-libdir DMRcate_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DMRcate_2.6.0.zip && rm DMRcate_2.6.0.tar.gz DMRcate_2.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 62447 100 62447 0 0 387k 0 --:--:-- --:--:-- --:--:-- 388k install for i386 * installing *source* package 'DMRcate' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' ** help *** installing help indices converting help for package 'DMRcate' finding HTML links ... done CpGannotated-class html DMR.plot html DMRcate-internal html DMRcate-package html DMResults-class html changeFDR html cpg.annotate html dmrcate html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/DMRcate.buildbin-libdir/00LOCK-DMRcate/00new/DMRcate/help/dmrcate.html extractRanges html rmSNPandCH html sequencing.annotate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' ** testing if installed package can be loaded from final location Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DMRcate' ... ** testing if installed package can be loaded Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' * MD5 sums packaged installation of 'DMRcate' as DMRcate_2.6.0.zip * DONE (DMRcate) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'DMRcate' successfully unpacked and MD5 sums checked