############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DAPAR.buildbin-libdir && mkdir DAPAR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DAPAR.buildbin-libdir DAPAR_1.24.8.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'DAPAR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DAPAR' finding HTML links ... done AggregateMetacell html BuildAdjacencyMatrix html BuildColumnToProteinDataset html BuildColumnToProteinDataset_par html BuildMetaCell html CVDistD_HC html CountPep html ExtendPalette html GOAnalysisSave html finding level-2 HTML links ... done GetCC html GetColorsForConditions html GetDetailedNbPeptides html GetDetailedNbPeptidesUsed html GetIndices_BasedOnConditions html GetIndices_MetacellFiltering html GetIndices_WholeLine html GetIndices_WholeMatrix html GetKeyId html GetMatAdj html GetMetacell html GetNbPeptidesUsed html GetTypeofData html Get_AllComparisons html GlobalQuantileAlignment html GraphPepProt html LH0 html LH0.lm html LH1 html LH1.lm html LOESS html MeanCentering html MetaCellFiltering html MetacellFilteringScope html Metacell_generic html Metacell_maxquant html Metacell_proline html NumericalFiltering html NumericalgetIndicesOfLinesToRemove html QuantileCentering html SetCC html SetMatAdj html Set_POV_MEC_tags html StringBasedFiltering html StringBasedFiltering2 html SumByColumns html SymFilteringOperators html UpdateMetacell html aggregateIter html aggregateIterParallel html aggregateMean html aggregateSum html aggregateTopn html averageIntensities html barplotEnrichGO_HC html barplotGroupGO_HC html boxPlotD_HC html buildGraph html check.conditions html check.design html checkClusterability html classic1wayAnova html compareNormalizationD_HC html compute_t_tests html corrMatrixD_HC html createMSnset html dapar_hc_ExportMenu html dapar_hc_chart html deleteLinesFromIndices html densityPlotD_HC html diffAnaComputeFDR html diffAnaGetSignificant html diffAnaSave html diffAnaVolcanoplot html diffAnaVolcanoplot_rCharts html display.CC.visNet html enrich_GO html finalizeAggregation html findMECBlock html formatLimmaResult html formatPHResults html fudge2LRT html get.pep.prot.cc html getIndicesConditions html getIndicesOfLinesToRemove html getListNbValuesInLines html getNumberOf html getNumberOfEmptyLines html getPourcentageOfMV html getProcessingInfo html getProteinsStats html getQuantile4Imp html getTextForAggregation html getTextForAnaDiff html getTextForFiltering html getTextForGOAnalysis html getTextForHypothesisTest html getTextForNewDataset html getTextForNormalization html getTextForpeptideImputation html getTextForproteinImputation html group_GO html hc_logFC_DensityPlot html hc_mvTypePlot2 html heatmapD html heatmapForMissingValues html histPValue_HC html impute.pa2 html inner.aggregate.iter html inner.aggregate.topn html inner.mean html inner.sum html limmaCompleteTest html listSheets html make.contrast html make.design.1 html make.design.2 html make.design.3 html make.design html match.metacell html metacell.def html metacellHisto_HC html metacellPerLinesHistoPerCondition_HC html metacellPerLinesHisto_HC html metacombine html mvImage html my_hc_ExportMenu html my_hc_chart html nonzero html normalizeMethods.dapar html pepa.test html plotJitter html plotJitter_rCharts html plotPCA_Eigen html plotPCA_Eigen_hc html plotPCA_Ind html plotPCA_Var html postHocTest html proportionConRev_HC html rbindMSnset html reIntroduceMEC html readExcel html removeLines html samLRT html saveParameters html scatterplotEnrichGO_HC html search.metacell.tags html splitAdjacencyMat html test.design html translatedRandomBeta html univ_AnnotDbPkg html violinPlotD html visualizeClusters html vsn html wrapper.CVDistD_HC html wrapper.compareNormalizationD_HC html wrapper.corrMatrixD_HC html wrapper.dapar.impute.mi html wrapper.heatmapD html wrapper.impute.KNN html wrapper.impute.detQuant html wrapper.impute.fixedValue html wrapper.impute.mle html wrapper.impute.pa html wrapper.impute.pa2 html wrapper.impute.slsa html wrapper.mvImage html wrapper.normalizeD html wrapper.pca html wrapperCalibrationPlot html wrapperClassic1wayAnova html wrapperRunClustering html write.excel html writeMSnsetToCSV html writeMSnsetToExcel html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DAPAR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DAPAR' as DAPAR_1.24.8.zip * DONE (DAPAR)