############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CoRegFlux_1.8.0.tar.gz && rm -rf CoRegFlux.buildbin-libdir && mkdir CoRegFlux.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoRegFlux.buildbin-libdir CoRegFlux_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CoRegFlux_1.8.0.zip && rm CoRegFlux_1.8.0.tar.gz CoRegFlux_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 16 4573k 16 748k 0 0 1975k 0 0:00:02 --:--:-- 0:00:02 1975k 95 4573k 95 4386k 0 0 3172k 0 0:00:01 0:00:01 --:--:-- 3171k 100 4573k 100 4573k 0 0 3217k 0 0:00:01 0:00:01 --:--:-- 3218k install for i386 * installing *source* package 'CoRegFlux' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CoRegFlux' finding HTML links ... done FBA_step html ODCurveToFluxCurves html ODCurveToMetabolicGeneCurves html ODToFluxBounds html ODcurveToMetCurve html ODtoflux html PredictedGeneState html SC_EXP_DATA html SC_GRN_1 html SC_Test_data html SC_experiment_influence html Simulation html Simulation_Step html adjust_constraints_to_observed_rates html aliases_SC html build_exchange_met html continuous_gpr html convert_metabolites_to_model_names html coregflux_static html euler_step_biomass html euler_step_metabolites html get_biomass_flux_position html get_fba_fluxes_from_observations html get_fva_intervals_from_observations html get_linear_model html get_metabolites_exchange_fluxes html gpr_expression html iMM904 html perturbation_function html predict_linear_model_influence html train_continuous_model html update_fluxes_constraints_GRegulation html update_fluxes_constraints_geneKOOV html update_fluxes_constraints_influence html update_fluxes_state html update_system_state html update_uptake_fluxes_constraints_metabolites html visFluxCurves html visMetabolicGeneCurves html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'CoRegFlux' is deprecated and will be removed from Bioconductor version 3.14 ** testing if installed package can be loaded from final location Warning: Package 'CoRegFlux' is deprecated and will be removed from Bioconductor version 3.14 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CoRegFlux' ... ** testing if installed package can be loaded Warning: Package 'CoRegFlux' is deprecated and will be removed from Bioconductor version 3.14 * MD5 sums packaged installation of 'CoRegFlux' as CoRegFlux_1.8.0.zip * DONE (CoRegFlux) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CoRegFlux' successfully unpacked and MD5 sums checked