############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ChIPanalyser_1.14.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.14.0.zip && rm ChIPanalyser_1.14.0.tar.gz ChIPanalyser_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 533k 0 5187 0 0 63493 0 0:00:08 --:--:-- 0:00:08 63256 100 533k 100 533k 0 0 1180k 0 --:--:-- --:--:-- --:--:-- 1181k install for i386 * installing *source* package 'ChIPanalyser' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'drop' in package 'ChIPanalyser' ** help *** installing help indices converting help for package 'ChIPanalyser' finding HTML links ... done BPFrequency-methods html BPFrequency html BPFrequency_--methods html BPFrequency_- html ChIPScore-class html ChIPanalyser-package html DNASequenceLength-methods html DNASequenceLength html GRList-class html PFMFormat-methods html PFMFormat html PFMFormat_--methods html PFMFormat_ html PWMThreshold-methods html PWMThreshold html PWMThreshold_--methods html PWMThreshold_- html PWMpseudocount-methods html PWMpseudocount html PWMpseudocount_--methods html PWMpseudocount_- html PositionFrequencyMatrix-methods html PositionFrequencyMatrix html PositionFrequencyMatrix_--methods html PositionFrequencyMatrix_- html PositionWeightMatrix-methods html PositionWeightMatrix html PositionWeightMatrix_--methods html PositionWeightMatrix_- html averageExpPWMScore-methods html averageExpPWMScore html backgroundSignal-methods html backgroundSignal html backgroundSignal_--methods html backgroundSignal_- html boundMolecules-methods html boundMolecules html boundMolecules_--methods html boundMolecules_- html chipMean-methods html chipMean html chipMean_--methods html chipMean_- html chipSd-methods html chipSd html chipSd_--methods html chipSd_- html chipSmooth-methods html chipSmooth html chipSmooth_--methods html chipSmooth_- html computeChIPProfile html finding level-2 HTML links ... done computeGenomeWideScores html computeOccupancy html computeOptimal html computePWMScore html data html drop-methods html drop html genomicProfiles-class html genomicProfiles html genomicProfilesInternal-class html initialize-methods html lambdaPWM-methods html lambdaPWM html lambdaPWM_--methods html lambdaPWM_ html loci-class html loci-methods html loci html lociWidth-methods html lociWidth html lociWidth_--methods html lociWidth_ html maxPWMScore-methods html maxPWMScore html maxSignal-methods html maxSignal html maxSignal_--methods html maxSignal_- html minPWMScore-methods html minPWMScore html naturalLog-methods html naturalLog html naturalLog_--methods html naturalLog_- html noOfSites-methods html noOfSites html noOfSites_--methods html noOfSites_- html noiseFilter-methods html noiseFilter html noiseFilter_--methods html noiseFilter_ html nos-class html parameterOptions-class html parameterOptions html ploidy-methods html ploidy html ploidy_--methods html ploidy_- html plotOccupancyProfile html plotOptimalHeatMaps html processingChIP html profileAccuracyEstimate html profiles-methods html removeBackground-methods html removeBackground html removeBackground_--methods html removeBackground_- html scores-methods html scores html searchSites html show-methods html stepSize-methods html stepSize html stepSize_--methods html stepSize_- html strandRule-methods html strandRule html strandRule_--methods html strandRule_- html whichstrand-methods html whichstrand html whichstrand_--methods html whichstrand_- html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ChIPanalyser' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ChIPanalyser' as ChIPanalyser_1.14.0.zip * DONE (ChIPanalyser) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'ChIPanalyser' successfully unpacked and MD5 sums checked