############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf COSNet.buildbin-libdir && mkdir COSNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COSNet.buildbin-libdir COSNet_1.26.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'COSNet' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c COSNet.c -o COSNet.o COSNet.c: In function 'error_minimization': COSNet.c:462:26: warning: 'theta_best_over' may be used uninitialized in this function [-Wmaybe-uninitialized] theta_best = theta_best + DBL_MIN; ^ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o COSNet.dll tmp.def COSNet.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/COSNet.buildbin-libdir/00LOCK-COSNet/00new/COSNet/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'COSNet' finding HTML links ... done COSNet-package html COSNet html cosnet.cross.validation html find.division.not.strat html find.division.strat html generate_labels html generate_points html optimize_pos_above html optimizep html reg_data html runSubnet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location COSNet: Cost-Sensitive algorithm for binary classification in graphs. ** testing if installed package can be loaded from final location COSNet: Cost-Sensitive algorithm for binary classification in graphs. ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'COSNet' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c COSNet.c -o COSNet.o COSNet.c: In function 'error_minimization': COSNet.c:462:26: warning: 'theta_best_over' may be used uninitialized in this function [-Wmaybe-uninitialized] theta_best = theta_best + DBL_MIN; ^ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o COSNet.dll tmp.def COSNet.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/COSNet.buildbin-libdir/COSNet/libs/x64 ** testing if installed package can be loaded COSNet: Cost-Sensitive algorithm for binary classification in graphs. * MD5 sums packaged installation of 'COSNet' as COSNet_1.26.0.zip * DONE (COSNet)