############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CONFESS_1.20.0.tar.gz && rm -rf CONFESS.buildbin-libdir && mkdir CONFESS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CONFESS.buildbin-libdir CONFESS_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CONFESS_1.20.0.zip && rm CONFESS_1.20.0.tar.gz CONFESS_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 32 1320k 32 427k 0 0 1136k 0 0:00:01 --:--:-- 0:00:01 1136k 100 1320k 100 1320k 0 0 1600k 0 --:--:-- --:--:-- --:--:-- 1600k install for i386 * installing *source* package 'CONFESS' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** help *** installing help indices converting help for package 'CONFESS' finding HTML links ... done BGcorrectFluo html BatchFluo html CVsampler html DDHFfit html DDHFinput html FluoInspection html FluoSelection_byRun html Fluo_CV_modeling html Fluo_CV_prep html Fluo_adjustment html Fluo_inspection html Fluo_modeling html Fluo_ordering html GAPanalysis html GrubbsOutliers html LocationMatrix html Results html SpotStats html SpotbyStrLines html addKpredictions html adjustFluo html aveDiff html boxFluo html boxcoxMatrix html boxcoxMatrixEst html caseof0s html caseof1R0G html caseof1R1G html caseof1R2G html caseof2R1G html caseof2R2G html caseof2Rs0G html clu html cluster2outlier html contrastFluo html cpPELT html cpoints html createFluo html cutpointsEstimator html ddhft.np.2 html defineLocClusters html denoisefun html denoiser html despecklefun html diagnoseResiduals html distfromcenter html doTransform html estimate.new.pseudotimes html estimatePath html estimates.2 html estimates html extractBFArea html failurecase html fclust html files html filled.contour3 html findPattern html fixPath html flowclust_step1 html flowclust_step2 html forceBF html function.from.vector html getCoordinates_stats html getCsFAIL html getFluo html getFluo_byRun html getSpot html giveWarning html grouplines html grubbs html highlight.cols html invTransform html isotone html joinAreas html listSorter html lmFluo html mean_signal html measureB html measureF html multiplot html myt html orderFluo html path.initiator html pathEstimator html pathUpdater html plotImages html plot_clusgap html predict.kmeans html processImg html project html readChaImg html readFiles html readOriImg html reestimate.pseudos.byCV html refineMixes html revDDHFinput html signal.from.matrix html significantSignal html simcells html sortCentroids html spot.simulator html spotCenter html spotCoords html spotEstimator html step1 html step2.1 html step2 html step3.1 html step3 html step4 html steps2_4 html straightColLines html straightRowLines html subsetAnalysis html summarizeAdjFluo html transformFluo html trigofun html unnormalizeC01 html updateCentroids html updateCentroidsPaths html which.min.diff html zoomInBF html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** testing if installed package can be loaded from final location Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CONFESS' ... ** testing if installed package can be loaded Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' * MD5 sums packaged installation of 'CONFESS' as CONFESS_1.20.0.zip * DONE (CONFESS) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CONFESS' successfully unpacked and MD5 sums checked