############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNAnorm.buildbin-libdir CNAnorm_1.38.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'CNAnorm' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c daxpy.f -o daxpy.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c ddot.f -o ddot.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbfa.f -o dgbfa.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbsl.f -o dgbsl.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dscal.f -o dscal.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dsmooth.f -o dsmooth.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c idamax.f -o idamax.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CNAnorm.buildbin-libdir/00LOCK-CNAnorm/00new/CNAnorm/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CNAnorm' finding HTML links ... done CN html CNAnorm-class html DerivData-class html InData-class html LS041 html Params-class html addDNACopy-methods html addSmooth-methods html chrsAndpos-methods html data-hg19_hs_ideogr html dataFrame2object html discreteNorm-methods html exportTable-method html gPar html gcNorm-methods html peakPloidy html plotGenome-methods html plotPeaks-methods html ratio-methods html suggValid-methods html validation-methods html workflowWrapper html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CNAnorm' ... ** libs "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c daxpy.f -o daxpy.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c ddot.f -o ddot.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbfa.f -o dgbfa.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbsl.f -o dgbsl.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dscal.f -o dscal.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dsmooth.f -o dsmooth.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c idamax.f -o idamax.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'CNAnorm' as CNAnorm_1.38.0.zip * DONE (CNAnorm)