############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CEMiTool_1.16.0.tar.gz && rm -rf CEMiTool.buildbin-libdir && mkdir CEMiTool.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CEMiTool.buildbin-libdir CEMiTool_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CEMiTool_1.16.0.zip && rm CEMiTool_1.16.0.tar.gz CEMiTool_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 43 4048k 43 1749k 0 0 2240k 0 0:00:01 --:--:-- 0:00:01 2240k 100 4048k 100 4048k 0 0 2826k 0 0:00:01 0:00:01 --:--:-- 2827k install for i386 * installing *source* package 'CEMiTool' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CEMiTool' finding HTML links ... done CEMiTool-class html adj_data html cem html cemitool html diagnostic_report html expr0 html expr_data html expr_pct_filter html filter_expr html find_modules html fit_data html generate_report html get_adj html get_beta_data html get_cemitool_r2_beta html get_connectivity html get_hubs html get_merged_mods html get_mods html get_phi html gsea_data html interactions_data html mod_colors html mod_gene_num html mod_gsea html mod_names html mod_ora html mod_summary html module_genes html module_to_gmt html new_cem html nmodules html ora_data html plot_beta_r2 html plot_gsea html plot_hist html plot_interactions html plot_mean_k html plot_mean_var html plot_ora html plot_ora_single html plot_profile html plot_qq html plot_sample_tree html read_gmt html sample_annot html sample_annotation html save_plots html select_genes html show-CEMiTool-method html show_plot html vst html write_files html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CEMiTool' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CEMiTool' as CEMiTool_1.16.0.zip * DONE (CEMiTool) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CEMiTool' successfully unpacked and MD5 sums checked