############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CARNIVAL_2.2.0.tar.gz && rm -rf CARNIVAL.buildbin-libdir && mkdir CARNIVAL.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CARNIVAL.buildbin-libdir CARNIVAL_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CARNIVAL_2.2.0.zip && rm CARNIVAL_2.2.0.tar.gz CARNIVAL_2.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2495k 100 2495k 0 0 3332k 0 --:--:-- --:--:-- --:--:-- 3336k install for i386 * installing *source* package 'CARNIVAL' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CARNIVAL' finding HTML links ... done addPerturbationNodes html checkCarnivalOptions html checkData html checkOptionsValidity html checkPriorKnowledgeNetwork html createInternalDataRepresentation html defaultCbcSolveCarnivalOptions html defaultCplexCarnivalOptions html defaultCplexSpecificOptions html defaultLpSolveCarnivalOptions html generateLpFileCarnival html getOptionsList html getSupportedSolvers html getSupportedSolversFunctions html isInputValidCarnival html parseCplexLog html prepareForCarnivalRun html preprocessPriorKnowledgeNetwork html processSolution html readOptions html runCARNIVAL html runFromLpCarnival html runInverseCarnival html runVanillaCarnival html sendTaskToSolver html setCarnivalOptions html solveCarnival html solveCarnivalFromLp html solveWithCbc html suggestedCbcSpecificOptions html suggestedCplexSpecificOptions html writeParsedData html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CARNIVAL' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CARNIVAL' as CARNIVAL_2.2.0.zip * DONE (CARNIVAL) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CARNIVAL' successfully unpacked and MD5 sums checked