Back to Workflows build report for BioC 3.12 |
This page was generated on 2021-05-07 15:45:15 -0400 (Fri, 07 May 2021).
To the developers/maintainers of the variants package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 28/28 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
variants 1.14.0 (landing page) Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | ERROR | ||||||||
Package: variants |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data variants |
StartedAt: 2021-05-07 09:38:38 -0400 (Fri, 07 May 2021) |
EndedAt: 2021-05-07 09:39:41 -0400 (Fri, 07 May 2021) |
EllapsedTime: 62.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data variants ### ############################################################################## ############################################################################## * checking for file ‘variants/DESCRIPTION’ ... OK * preparing ‘variants’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Annotating_Genomic_Variants.Rmd’ using rmarkdown Quitting from lines 234-237 (Annotating_Genomic_Variants.Rmd) Error: processing vignette 'Annotating_Genomic_Variants.Rmd' failed with diagnostics: the transcripts in 'transcripts' are on chromosomes that are not in 'x' --- failed re-building ‘Annotating_Genomic_Variants.Rmd’ SUMMARY: processing the following file failed: ‘Annotating_Genomic_Variants.Rmd’ Error: Vignette re-building failed. Execution halted