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CHECK report for flowWorkspaceData on nebbiolo1

This page was generated on 2021-02-25 14:11:44 -0500 (Thu, 25 Feb 2021).

To the developers/maintainers of the flowWorkspaceData package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 133/398HostnameOS / ArchINSTALLBUILDCHECK
flowWorkspaceData 3.2.0
Mike Jiang
Snapshot Date: 2021-02-25 09:00:14 -0500 (Thu, 25 Feb 2021)
URL: https://git.bioconductor.org/packages/flowWorkspaceData
Branch: RELEASE_3_12
Last Commit: 1722110
Last Changed Date: 2020-10-27 09:53:07 -0500 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  

Summary

Package: flowWorkspaceData
Version: 3.2.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:flowWorkspaceData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings flowWorkspaceData_3.2.0.tar.gz
StartedAt: 2021-02-25 10:48:50 -0500 (Thu, 25 Feb 2021)
EndedAt: 2021-02-25 10:49:03 -0500 (Thu, 25 Feb 2021)
EllapsedTime: 13.0 seconds
RetCode: 0
Status:   OK  
CheckDir: flowWorkspaceData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:flowWorkspaceData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings flowWorkspaceData_3.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/flowWorkspaceData.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowWorkspaceData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowWorkspaceData’ version ‘3.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowWorkspaceData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 85.6Mb
  sub-directories of 1Mb or more:
    extdata  85.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/flowWorkspaceData.Rcheck/00check.log’
for details.



Installation output

flowWorkspaceData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL flowWorkspaceData
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘flowWorkspaceData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowWorkspaceData)

Tests output


Example timings

flowWorkspaceData.Rcheck/flowWorkspaceData-Ex.timings

nameusersystemelapsed
flowWorkspaceData-package000
flowWorkspaceDataInfo000