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CHECK report for rat2302frmavecs on malbec1

This page was generated on 2020-07-29 15:30:05 -0400 (Wed, 29 Jul 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE rat2302frmavecs PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 11/11HostnameOS / ArchINSTALLBUILDCHECK
rat2302frmavecs 0.99.11
Sylvain Gubian
Snapshot Date: 2020-07-29 08:00:01 -0400 (Wed, 29 Jul 2020)
URL: https://git.bioconductor.org/packages/rat2302frmavecs
Branch: master
Last Commit: 68b05d4
Last Changed Date: 2019-02-07 03:01:49 -0400 (Thu, 07 Feb 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: rat2302frmavecs
Version: 0.99.11
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:rat2302frmavecs.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings rat2302frmavecs_0.99.11.tar.gz
StartedAt: 2020-07-29 09:03:14 -0400 (Wed, 29 Jul 2020)
EndedAt: 2020-07-29 09:04:26 -0400 (Wed, 29 Jul 2020)
EllapsedTime: 71.4 seconds
RetCode: 0
Status:  OK 
CheckDir: rat2302frmavecs.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:rat2302frmavecs.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings rat2302frmavecs_0.99.11.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-annotation/meat/rat2302frmavecs.Rcheck’
* using R version 4.0.2 (2020-06-22)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rat2302frmavecs/DESCRIPTION’ ... OK
* this is package ‘rat2302frmavecs’ version ‘0.99.11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rat2302frmavecs’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 16.8Mb
  sub-directories of 1Mb or more:
    data     10.0Mb
    extdata   6.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.12-data-annotation/meat/rat2302frmavecs.Rcheck/00check.log’
for details.



Installation output

rat2302frmavecs.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL rat2302frmavecs
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘rat2302frmavecs’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
** testing if installed package can be loaded from final location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
** testing if installed package keeps a record of temporary installation path
* DONE (rat2302frmavecs)

Tests output


Example timings

rat2302frmavecs.Rcheck/rat2302frmavecs-Ex.timings

nameusersystemelapsed
rat2302frmavecs1.9120.0401.953