| Back to Long Tests report for BioC 3.12 |
This page was generated on 2021-05-08 14:20:33 -0400 (Sat, 08 May 2021).
|
To the developers/maintainers of the beachmat package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2/10 | Hostname | OS / Arch | CHECK | |||||||
| beachmat 2.6.4 (landing page) Aaron Lun
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | ERROR | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | ERROR | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | ERROR | ||||||||
| Package: beachmat |
| Version: 2.6.4 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no beachmat_2.6.4.tar.gz |
| StartedAt: 2021-05-08 09:33:25 -0400 (Sat, 08 May 2021) |
| EndedAt: 2021-05-08 10:31:34 -0400 (Sat, 08 May 2021) |
| EllapsedTime: 3489.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: beachmat.Rcheck |
| Warnings: NA |
|
beachmat.Rcheck/tests_i386/testthat.Rout.fail
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(beachmat)
> test_check("beachmat")
-- R CMD build -----------------------------------------------------------------
* checking for file 'C:\Users\biocbuild\bbs-3.12-bioc-longtests\meat\beachmat.Rcheck\beachmat\testpkg/DESCRIPTION' ... OK
* preparing 'beachtest':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'beachtest_1.0.0.tar.gz'
-- R CMD check -----------------------------------------------------------------
* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc-longtests/tmpdir/RtmpCYO0zQ/file848ca6371c/beachtest.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'beachtest/DESCRIPTION' ... OK
* this is package 'beachtest' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'beachtest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking PDF version of manual ... OK
* DONE
Status: OK
== Failed tests ================================================================
-- Failure (test-check.R:6:5): extension test package CHECKs correctly ---------
`rcmdcheck::rcmdcheck(...)` threw an error.
Message: unused argument (document = FALSE)
Class: simpleError/error/condition
Backtrace:
x
1. \-testthat::expect_error(...) test-check.R:6:4
2. \-testthat:::quasi_capture(...)
3. +-testthat:::.capture(...)
4. | \-base::withCallingHandlers(...)
5. \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
|
beachmat.Rcheck/tests_x64/testthat.Rout.fail
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(beachmat)
> test_check("beachmat")
-- R CMD build -----------------------------------------------------------------
* checking for file 'C:\Users\biocbuild\bbs-3.12-bioc-longtests\meat\beachmat.Rcheck\beachmat\testpkg/DESCRIPTION' ... OK
* preparing 'beachtest':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'beachtest_1.0.0.tar.gz'
-- R CMD check -----------------------------------------------------------------
* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc-longtests/tmpdir/RtmpeYYy8G/fileb2826b15a1d/beachtest.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'beachtest/DESCRIPTION' ... OK
* this is package 'beachtest' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'beachtest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking PDF version of manual ... OK
* DONE
Status: OK
== Failed tests ================================================================
-- Failure (test-check.R:6:5): extension test package CHECKs correctly ---------
`rcmdcheck::rcmdcheck(...)` threw an error.
Message: unused argument (document = FALSE)
Class: simpleError/error/condition
Backtrace:
x
1. \-testthat::expect_error(...) test-check.R:6:4
2. \-testthat:::quasi_capture(...)
3. +-testthat:::.capture(...)
4. | \-base::withCallingHandlers(...)
5. \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
|
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no beachmat_2.6.4.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/beachmat.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'beachmat/DESCRIPTION' ... OK
* this is package 'beachmat' version '2.6.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'beachmat' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'DelayedArray:::bplapply2'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
** running tests for arch 'i386' ...
Running 'testthat.R'
ERROR
Running the tests in 'longtests/testthat.R' failed.
Last 13 lines of output:
-- Failure (test-check.R:6:5): extension test package CHECKs correctly ---------
`rcmdcheck::rcmdcheck(...)` threw an error.
Message: unused argument (document = FALSE)
Class: simpleError/error/condition
Backtrace:
x
1. \-testthat::expect_error(...) test-check.R:6:4
2. \-testthat:::quasi_capture(...)
3. +-testthat:::.capture(...)
4. | \-base::withCallingHandlers(...)
5. \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
** running tests for arch 'x64' ...
Running 'testthat.R'
ERROR
Running the tests in 'longtests/testthat.R' failed.
Last 13 lines of output:
-- Failure (test-check.R:6:5): extension test package CHECKs correctly ---------
`rcmdcheck::rcmdcheck(...)` threw an error.
Message: unused argument (document = FALSE)
Class: simpleError/error/condition
Backtrace:
x
1. \-testthat::expect_error(...) test-check.R:6:4
2. \-testthat:::quasi_capture(...)
3. +-testthat:::.capture(...)
4. | \-base::withCallingHandlers(...)
5. \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
* DONE
Status: 2 ERRORs, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/beachmat.Rcheck/00check.log'
for details.
beachmat.Rcheck/00install.out
* installing *source* package 'beachmat' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location *** arch - i386 *** arch - x64 ** testing if installed package can be loaded from final location *** arch - i386 *** arch - x64 ** testing if installed package keeps a record of temporary installation path * DONE (beachmat)