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INSTALL report for twilight on tokay1

This page was generated on 2021-05-06 12:34:04 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the twilight package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1913/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
twilight 1.66.0  (landing page)
Stefanie Scheid
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/twilight
Branch: RELEASE_3_12
Last Commit: a91a908
Last Changed Date: 2020-10-27 10:24:43 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: twilight
Version: 1.66.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/twilight_1.66.0.tar.gz && rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=twilight.buildbin-libdir twilight_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL twilight_1.66.0.zip && rm twilight_1.66.0.tar.gz twilight_1.66.0.zip
StartedAt: 2021-05-05 16:59:50 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:00:48 -0400 (Wed, 05 May 2021)
EllapsedTime: 58.0 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/twilight_1.66.0.tar.gz && rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=twilight.buildbin-libdir twilight_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL twilight_1.66.0.zip && rm twilight_1.66.0.tar.gz twilight_1.66.0.zip
###
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100  635k  100  635k    0     0  32.3M      0 --:--:-- --:--:-- --:--:-- 34.4M

install for i386

* installing *source* package 'twilight' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c confidence.line.c -o confidence.line.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c correlation.c -o correlation.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kstest.c -o kstest.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sep.c -o sep.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c twosample.perm.c -o twosample.perm.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c twosample.single.c -o twosample.single.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/twilight.buildbin-libdir/00LOCK-twilight/00new/twilight/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'twilight'
    finding HTML links ... done
    exfdr                                   html  
    expval                                  html  
    plot.twilight                           html  
    print.twilight                          html  
    twilight                                html  
    twilight.combi                          html  
    twilight.filtering                      html  
    twilight.getlambda                      html  
    twilight.getmatrix                      html  
    twilight.permute.pair                   html  
    twilight.permute.unpair                 html  
    twilight.pval                           html  
    twilight.teststat                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'twilight' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c confidence.line.c -o confidence.line.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c correlation.c -o correlation.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kstest.c -o kstest.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sep.c -o sep.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c twosample.perm.c -o twosample.perm.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c twosample.single.c -o twosample.single.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/twilight.buildbin-libdir/twilight/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'twilight' as twilight_1.66.0.zip
* DONE (twilight)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'twilight' successfully unpacked and MD5 sums checked