| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:39 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the singleCellTK package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1725/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| singleCellTK 2.0.0 (landing page) Yusuke Koga
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: singleCellTK |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/singleCellTK_2.0.0.tar.gz && rm -rf singleCellTK.buildbin-libdir && mkdir singleCellTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=singleCellTK.buildbin-libdir singleCellTK_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL singleCellTK_2.0.0.zip && rm singleCellTK_2.0.0.tar.gz singleCellTK_2.0.0.zip |
| StartedAt: 2021-05-05 19:20:36 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:22:11 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 95.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/singleCellTK_2.0.0.tar.gz && rm -rf singleCellTK.buildbin-libdir && mkdir singleCellTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=singleCellTK.buildbin-libdir singleCellTK_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL singleCellTK_2.0.0.zip && rm singleCellTK_2.0.0.tar.gz singleCellTK_2.0.0.zip
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install for i386
* installing *source* package 'singleCellTK' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'singleCellTK'
finding HTML links ... done
SEG html
calcEffectSizes html
combineSCE html
computeZScore html
constructSCE html
convertGeneIDs html
finding level-2 HTML links ... done
convertSCEToSeurat html
convertSeuratToSCE html
dataAnnotationColor html
discreteColorPalette html
distinctColors html
dot-addSeuratToMetaDataSCE html
dot-checkDiffExpResultExists html
dot-computeSignificantPC html
dot-extractSCEAnnotation html
dot-formatDEAList html
dot-getComponentNames html
dot-ggBar html
dot-ggDensity html
dot-ggScatter html
dot-ggViolin html
dot-sce2adata html
dot-seuratGetVariableFeatures html
dot-seuratInvalidate html
dot-updateAssaySCE html
downSampleCells html
downSampleDepth html
enrichRSCE html
exportSCE html
exportSCEtoAnnData html
exportSCEtoFlatFile html
featureIndex html
featureNameDedup html
findMarkerDiffExp html
generateMeta html
generateSimulatedData html
getBiomarker html
getMSigDBTable html
getPCA html
getSceParams html
getTSNE html
getTopHVG html
getUMAP html
gsvaSCE html
importAnnData html
importBUStools html
importCellRanger html
importCellRangerV2Sample html
importCellRangerV3Sample html
importDropEst html
importExampleData html
importFromFiles html
importGeneSetsFromCollection html
importGeneSetsFromGMT html
importGeneSetsFromList html
importGeneSetsFromMSigDB html
importMultipleSources html
importOptimus html
importSEQC html
importSTARsolo html
iterateSimulations html
mergeSCEColData html
mouseBrainSubsetSCE html
msigdb_table html
plotBarcodeRankDropsResults html
plotBarcodeRankScatter html
plotBatchVariance html
plotBcdsResults html
plotBiomarker html
plotCxdsResults html
plotDEGHeatmap html
plotDEGRegression html
plotDEGViolin html
plotDecontXResults html
plotDoubletCellsResults html
plotDoubletFinderResults html
plotEmptyDropsResults html
plotEmptyDropsScatter html
plotMASTThresholdGenes html
plotMarkerDiffExp html
plotPCA html
plotRunPerCellQCResults html
plotSCEBarAssayData html
plotSCEBarColData html
plotSCEBatchFeatureMean html
plotSCEDensity html
plotSCEDensityAssayData html
plotSCEDensityColData html
plotSCEDimReduceColData html
plotSCEDimReduceFeatures html
plotSCEHeatmap html
plotSCEScatter html
plotSCEViolin html
plotSCEViolinAssayData html
plotSCEViolinColData html
plotScdsHybridResults html
plotScrubletResults html
plotTSNE html
plotUMAP html
qcInputProcess html
readSingleCellMatrix html
reportCellQC html
reportDiffExp html
reportDropletQC html
reportQCTool html
retrieveSCEIndex html
runANOVA html
runBBKNN html
runBarcodeRankDrops html
runBcds html
runCellQC html
runComBat html
runCxds html
runCxdsBcdsHybrid html
runDEAnalysis html
runDESeq2 html
runDecontX html
runDoubletCells html
runDoubletFinder html
runDropletQC html
runEmptyDrops html
runFastMNN html
runKMeans html
runLimmaBC html
runLimmaDE html
runMAST html
runMNNCorrect html
runPerCellQC html
runSCANORAMA html
runSCMerge html
runScranSNN html
runScrublet html
runZINBWaVE html
sampleSummaryStats html
scater_logNormCounts html
sce html
sceBatches html
scran_modelGeneVar html
sctkListGeneSetCollections html
sctkPythonInstallConda html
sctkPythonInstallVirtualEnv html
selectSCTKConda html
selectSCTKVirtualEnvironment html
seuratComputeHeatmap html
seuratComputeJackStraw html
seuratElbowPlot html
seuratFindClusters html
seuratFindHVG html
seuratHeatmapPlot html
seuratICA html
seuratIntegration html
seuratJackStrawPlot html
seuratNormalizeData html
seuratPCA html
seuratPlotHVG html
seuratReductionPlot html
seuratRunTSNE html
seuratRunUMAP html
seuratSCTransform html
seuratScaleData html
simpleLog html
singleCellTK html
subDiffEx html
subsetSCECols html
subsetSCERows html
summarizeSCE html
trimCounts html
visPlot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'singleCellTK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'singleCellTK' as singleCellTK_2.0.0.zip
* DONE (singleCellTK)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'singleCellTK' successfully unpacked and MD5 sums checked