Davide Risso
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/scone |
| Branch: RELEASE_3_12 |
| Last Commit: 3fa8d6b |
| Last Changed Date: 2020-10-27 11:20:29 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:28 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the scone package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1650/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scone 1.14.0 (landing page) Davide Risso
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: scone |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/scone_1.14.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL scone_1.14.0.zip && rm scone_1.14.0.tar.gz scone_1.14.0.zip |
| StartedAt: 2021-05-05 19:13:16 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:15:35 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 138.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/scone_1.14.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL scone_1.14.0.zip && rm scone_1.14.0.tar.gz scone_1.14.0.zip
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install for i386
* installing *source* package 'scone' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'scone'
finding HTML links ... done
CLR_FN html
DESEQ_FN html
FQ_FN html
SCRAN_FN html
SUM_FN html
SconeExperiment-class html
finding level-2 HTML links ... done
TMM_FN html
UQ_FN html
biplot_color html
biplot_interactive html
control_genes html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpWkIzCn/R.INSTALL2fbc734b6d51/scone/man/control_genes.Rd:28: file link 'toupper' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpWkIzCn/R.INSTALL2fbc734b6d51/scone/man/control_genes.Rd:29: file link 'tolower' in package 'base' does not exist and so has been treated as a topic
estimate_ziber html
factor_sample_filter html
fast_estimate_ziber html
get_bio html
get_design html
get_negconruv html
get_normalized html
get_params html
get_qc html
get_scores html
impute_expectation html
impute_null html
lm_adjust html
make_design html
metric_sample_filter html
scone html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpWkIzCn/R.INSTALL2fbc734b6d51/scone/man/scone.Rd:101: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
sconeReport html
scone_easybake html
score_matrix html
select_methods html
simple_FNR_params html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'scone' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scone' as scone_1.14.0.zip
* DONE (scone)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'scone' successfully unpacked and MD5 sums checked