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BUILD report for rTRM on nebbiolo1

This page was generated on 2021-01-19 11:54:20 -0500 (Tue, 19 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE rTRM PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1600/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rTRM 1.28.0
Diego Diez
Snapshot Date: 2021-01-18 14:42:24 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/rTRM
Branch: RELEASE_3_12
Last Commit: 2908ebc
Last Changed Date: 2020-10-27 10:51:24 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK [ OK ] OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rTRM
Version: 1.28.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
StartedAt: 2021-01-18 19:35:33 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 19:36:59 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 85.7 seconds
RetCode: 0
Status:  OK 
PackageFile: rTRM_1.28.0.tar.gz
PackageFileSize: 3.169 MiB

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
###
##############################################################################
##############################################################################


* checking for file ‘rTRM/DESCRIPTION’ ... OK
* preparing ‘rTRM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX Loading required package: igraph

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

...
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
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entering extended mode
LaTeX2e <2020-02-02> patch level 2
L3 programming layer <2020-02-14>
(./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2019/12/20 v1.4l Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/home/biocbuild/bbs-3.12-bioc/R/share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
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 []\T1/zi4/m/n/10 findTRM(g, target, query, method = "nsa", max.bridge = 1, ext
ended = FALSE, strict = FALSE, type = "igraph") 
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
Overfull \hbox (944.66843pt too wide) in paragraph at lines 872--872
 []\T1/zi4/m/n/10 plotGraph(g, layout = layout.fruchterman.reingold, mar = .5, 
vertex.pch = 21, vertex.cex, vertex.col, vertex.bg, vertex.lwd, edge.col, edge.
lwd, edge.lty, label = TRUE, label.col, label.cex, label.pos = NULL, label.offs
et = 1.5, adjust.label.col = FALSE, normalize.layout = TRUE) 
[17]
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 []\T1/zi4/m/n/10 plotTRM(g, layout = layout.fruchterman.reingold, mar = .5, ve
rtex.col, vertex.cex, vertex.lwd, edge.col, edge.lwd, edge.lty, label = TRUE, l
abel.cex, label.col, label.pos = NULL, label.offset = 1.5, adjust.label.col = F
ALSE, normalize.layout = TRUE) 
[18]
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Package rerunfilecheck Warning: File `Rd2.out' has changed.
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(see the transcript file for additional information){/usr/share/texlive/texmf-d
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t/fonts/type1/urw/times/utmri8a.pfb>
Output written on Rd2.pdf (21 pages, 107406 bytes).
Transcript written on Rd2.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
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[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
Overfull \hbox (944.66843pt too wide) in paragraph at lines 872--872
 []\T1/zi4/m/n/10 plotGraph(g, layout = layout.fruchterman.reingold, mar = .5, 
vertex.pch = 21, vertex.cex, vertex.col, vertex.bg, vertex.lwd, edge.col, edge.
lwd, edge.lty, label = TRUE, label.col, label.cex, label.pos = NULL, label.offs
et = 1.5, adjust.label.col = FALSE, normalize.layout = TRUE) 
[18]
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 []\T1/zi4/m/n/10 plotTRM(g, layout = layout.fruchterman.reingold, mar = .5, ve
rtex.col, vertex.cex, vertex.lwd, edge.col, edge.lwd, edge.lty, label = TRUE, l
abel.cex, label.col, label.pos = NULL, label.offset = 1.5, adjust.label.col = F
ALSE, normalize.layout = TRUE) 
[19]
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 "physical", mimic.old = FALSE) 
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(see the transcript file for additional information){/usr/share/texlive/texmf-d
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Output written on Rd2.pdf (22 pages, 112272 bytes).
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This is makeindex, version 2.15 [TeX Live 2019] (kpathsea + Thai support).
Scanning input file Rd2.idx....done (37 entries accepted, 0 rejected).
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