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INSTALL report for phenopath on tokay1

This page was generated on 2021-05-06 12:32:45 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the phenopath package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1337/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenopath 1.14.0  (landing page)
Kieran Campbell
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/phenopath
Branch: RELEASE_3_12
Last Commit: 1a99e25
Last Changed Date: 2020-10-27 11:25:22 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: phenopath
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/phenopath_1.14.0.tar.gz && rm -rf phenopath.buildbin-libdir && mkdir phenopath.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenopath.buildbin-libdir phenopath_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL phenopath_1.14.0.zip && rm phenopath_1.14.0.tar.gz phenopath_1.14.0.zip
StartedAt: 2021-05-05 18:30:11 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:31:39 -0400 (Wed, 05 May 2021)
EllapsedTime: 88.2 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/phenopath_1.14.0.tar.gz && rm -rf phenopath.buildbin-libdir && mkdir phenopath.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenopath.buildbin-libdir phenopath_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL phenopath_1.14.0.zip && rm phenopath_1.14.0.tar.gz phenopath_1.14.0.zip
###
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100  426k  100  426k    0     0  19.4M      0 --:--:-- --:--:-- --:--:-- 20.8M

install for i386

* installing *source* package 'phenopath' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cavi.cpp -o cavi.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o phenopath.dll tmp.def RcppExports.o cavi.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/phenopath.buildbin-libdir/00LOCK-phenopath/00new/phenopath/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phenopath'
    finding HTML links ... done
    clvm                                    html  
    interaction_effects                     html  
    interaction_sds                         html  
    interactions                            html  
    phenopath                               html  
    finding level-2 HTML links ... done

    plot_elbo                               html  
    print.phenopath_fit                     html  
    sample_fns                              html  
    scale_vec                               html  
    significant_interactions                html  
    simulate_one_gene                       html  
    simulate_phenopath                      html  
    trajectory                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phenopath' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cavi.cpp -o cavi.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o phenopath.dll tmp.def RcppExports.o cavi.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/phenopath.buildbin-libdir/phenopath/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phenopath' as phenopath_1.14.0.zip
* DONE (phenopath)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'phenopath' successfully unpacked and MD5 sums checked