Panagiotis Moulos
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/metaseqR |
| Branch: RELEASE_3_12 |
| Last Commit: 42215cd |
| Last Changed Date: 2020-10-27 10:55:21 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:12 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the metaseqR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1059/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Panagiotis Moulos
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: metaseqR |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/metaseqR_1.30.0.tar.gz && rm -rf metaseqR.buildbin-libdir && mkdir metaseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR.buildbin-libdir metaseqR_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL metaseqR_1.30.0.zip && rm metaseqR_1.30.0.tar.gz metaseqR_1.30.0.zip |
| StartedAt: 2021-05-05 18:06:26 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:09:10 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 163.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/metaseqR_1.30.0.tar.gz && rm -rf metaseqR.buildbin-libdir && mkdir metaseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR.buildbin-libdir metaseqR_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL metaseqR_1.30.0.zip && rm metaseqR_1.30.0.tar.gz metaseqR_1.30.0.zip
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install for i386
* installing *source* package 'metaseqR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** help
*** installing help indices
converting help for package 'metaseqR'
finding HTML links ... done
as.class.vector html
build.export html
calc.f1score html
calc.otr html
cddat html
cdplot html
check.contrast.format html
check.file.args html
check.graphics.file html
check.graphics.type html
check.libsize html
check.main.args html
check.num.args html
check.packages html
check.parallel html
check.text.args html
combine.bonferroni html
combine.maxp html
combine.minp html
combine.simes html
combine.weight html
construct.gene.model html
construct.utr.model html
diagplot.avg.ftd html
diagplot.boxplot html
diagplot.cor html
diagplot.de.heatmap html
diagplot.edaseq html
diagplot.filtered html
diagplot.ftd html
diagplot.mds html
diagplot.metaseqr html
diagplot.noiseq html
diagplot.noiseq.saturation html
diagplot.pairs html
diagplot.roc html
diagplot.venn html
diagplot.volcano html
disp html
downsample.counts html
estimate.aufc.weights html
estimate.sim.params html
filter.exons html
filter.genes html
filter.high html
filter.low html
fisher.method html
fisher.method.perm html
fisher.sum html
get.annotation html
get.arg html
get.biotypes html
get.bs.organism html
get.dataset html
get.defaults html
get.ensembl.annotation html
get.exon.attributes html
get.gc.content html
get.gene.attributes html
get.host html
get.preset.opts html
get.strict.biofilter html
get.transcript.utr.attributes html
get.ucsc.annotation html
get.ucsc.credentials html
get.ucsc.dbl html
get.ucsc.organism html
get.ucsc.query html
get.ucsc.tabledef html
get.ucsc.tbl.tpl html
get.valid.chrs html
get.weights html
graphics.close html
graphics.open html
hg19.exon.counts html
libsize.list.hg19 html
libsize.list.mm9 html
load.bs.genome html
log2disp html
make.avg.expression html
make.contrast.list html
make.export.list html
make.fold.change html
make.grid html
make.highcharts.points html
make.html.body html
make.html.cells html
make.html.header html
make.html.rows html
make.html.table html
make.matrix html
make.path.struct html
make.permutation html
make.project.path html
make.report.messages html
make.sample.list html
make.sim.data.sd html
make.sim.data.tcc html
make.stat html
make.transformation html
make.venn.areas html
make.venn.colorscheme html
make.venn.counts html
make.venn.pairs html
meta.perm html
meta.test html
meta.worker html
metaseqR-package html
metaseqr html
mlfo html
mm9.gene.counts html
nat2log html
normalize.deseq html
normalize.edaseq html
normalize.edger html
normalize.nbpseq html
normalize.noiseq html
read.targets html
read2count html
reduce.exons html
reduce.gene.data html
sample.list.hg19 html
sample.list.mm9 html
set.arg html
stat.bayseq html
stat.deseq html
stat.edger html
stat.limma html
stat.nbpseq html
stat.noiseq html
validate.alg.args html
validate.list.args html
wapply html
wp.adjust html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
Warning: Package 'metaseqR' is deprecated and will be removed from Bioconductor
version 3.13. Package functionality moved to Bioconductor package
metaseqR2.
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
Warning: Package 'metaseqR' is deprecated and will be removed from Bioconductor
version 3.13. Package functionality moved to Bioconductor package
metaseqR2.
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metaseqR' ...
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
Warning: Package 'metaseqR' is deprecated and will be removed from Bioconductor
version 3.13. Package functionality moved to Bioconductor package
metaseqR2.
* MD5 sums
packaged installation of 'metaseqR' as metaseqR_1.30.0.zip
* DONE (metaseqR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'metaseqR' successfully unpacked and MD5 sums checked