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INSTALL report for metahdep on malbec1

This page was generated on 2021-05-06 12:28:11 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the metahdep package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1055/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metahdep 1.48.0  (landing page)
John R. Stevens
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/metahdep
Branch: RELEASE_3_12
Last Commit: d556de9
Last Changed Date: 2020-10-27 10:35:17 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: metahdep
Version: 1.48.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL metahdep
StartedAt: 2021-05-05 16:13:09 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 16:13:12 -0400 (Wed, 05 May 2021)
EllapsedTime: 3.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL metahdep
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘metahdep’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:0:
metahdep.c: In function ‘get_row_indices2’:
/home/biocbuild/bbs-3.12-bioc/R/include/Rinternals.h:620:18: warning: passing argument 5 of ‘metan_binary_search_unique’ makes integer from pointer without a cast [-Wint-conversion]
 #define CHAR(x)  R_CHAR(x)
                  ^
metahdep.c:471:79: note: in expansion of macro ‘CHAR’
     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
                                                                               ^~~~
metahdep.c:372:6: note: expected ‘char’ but argument is of type ‘const char *’
 SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o metahdep.so metahdep.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-metahdep/00new/metahdep/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metahdep)