Florian P Breitwieser
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/isobar |
| Branch: RELEASE_3_12 |
| Last Commit: 37cd3b5 |
| Last Changed Date: 2020-10-27 10:43:37 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:53 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the isobar package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 917/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| isobar 1.36.0 (landing page) Florian P Breitwieser
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: isobar |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/isobar_1.36.0.tar.gz && rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=isobar.buildbin-libdir isobar_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL isobar_1.36.0.zip && rm isobar_1.36.0.tar.gz isobar_1.36.0.zip |
| StartedAt: 2021-05-05 17:24:43 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:26:48 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 124.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/isobar_1.36.0.tar.gz && rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=isobar.buildbin-libdir isobar_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL isobar_1.36.0.zip && rm isobar_1.36.0.tar.gz isobar_1.36.0.zip
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install for i386
* installing *source* package 'isobar' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'coerce' with signature '"MSnSet","IBSpectra"': no definition for class "MSnSet"
in method for 'coerce' with signature '"IBSpectra","MSnSet"': no definition for class "MSnSet"
Note: possible error in 'png(sprintf("pairwise_correlation_%s.png", ': unused argument (title = "Pairwise Correlation plot")
** help
*** installing help indices
converting help for package 'isobar'
finding HTML links ... done
IBSpectra-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpE3CGc4/R.INSTALL17c0b3d4cd8/isobar/man/IBSpectra-class.Rd:175: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpE3CGc4/R.INSTALL17c0b3d4cd8/isobar/man/IBSpectra-class.Rd:176: missing file link 'MSnbase'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpE3CGc4/R.INSTALL17c0b3d4cd8/isobar/man/IBSpectra-class.Rd:178: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpE3CGc4/R.INSTALL17c0b3d4cd8/isobar/man/IBSpectra-class.Rd:232: file link 'ProteinGroup' in package 'isobar' does not exist and so has been treated as a topic
NoiseModel-class html
ProteinGroup-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpE3CGc4/R.INSTALL17c0b3d4cd8/isobar/man/ProteinGroup-class.Rd:177: file link 'IBSpectra' in package 'isobar' does not exist and so has been treated as a topic
TlsParameter-class html
Tlsd-class html
calc.delta.score html
calc.startpos html
calculate-pvalues html
calculate.dNSAF html
calculate.emPAI html
correct.peptide.ratios html
distr-methods html
fit-distr html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpE3CGc4/R.INSTALL17c0b3d4cd8/isobar/man/fit-distr.Rd:28: file link 'Cauchy' in package 'distr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpE3CGc4/R.INSTALL17c0b3d4cd8/isobar/man/fit-distr.Rd:28: file link 'Norm' in package 'distr' does not exist and so has been treated as a topic
getPeptideModifContext html
getPhosphoRSProbabilities html
getPtmInfo html
groupMemberPeptides html
human.protein.names html
isobar-analysis html
isobar-data html
isobar-import html
isobar-log html
isobar-package html
isobar-plots html
isobar-preprocessing html
isobar-reports html
maplot.protein html
number.ranges html
observedKnownSites html
peptide.count html
proteinInfo-methods html
proteinNameAndDescription html
ratio-summ html
ratiosReshapeWide html
reporter.protein-methods html
sanitize html
shared.ratios html
shared.ratios.sign html
specificities html
spectra.count2 html
subsetIBSpectra html
utils html
writeHscoreData html
writeIBSpectra html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'isobar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'isobar' as isobar_1.36.0.zip
* DONE (isobar)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'isobar' successfully unpacked and MD5 sums checked