Mingxiang Teng
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/gcapc |
| Branch: RELEASE_3_12 |
| Last Commit: 6c7d83d |
| Last Changed Date: 2020-10-27 11:20:02 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:23 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the gcapc package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 667/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gcapc 1.14.0 (landing page) Mingxiang Teng
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: gcapc |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/gcapc_1.14.0.tar.gz && rm -rf gcapc.buildbin-libdir && mkdir gcapc.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcapc.buildbin-libdir gcapc_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL gcapc_1.14.0.zip && rm gcapc_1.14.0.tar.gz gcapc_1.14.0.zip |
| StartedAt: 2021-05-05 18:01:31 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:02:16 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 44.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/gcapc_1.14.0.tar.gz && rm -rf gcapc.buildbin-libdir && mkdir gcapc.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcapc.buildbin-libdir gcapc_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL gcapc_1.14.0.zip && rm gcapc_1.14.0.tar.gz gcapc_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 3418k 100 3418k 0 0 68.9M 0 --:--:-- --:--:-- --:--:-- 71.0M
install for i386
* installing *source* package 'gcapc' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gcapc'
finding HTML links ... done
bindWidth html
gcEffects html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/gcEffects.Rd:92: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/gcEffects.Rd:95: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/gcEffects.Rd:97: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
gcapcPeaks html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/gcapcPeaks.Rd:47: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/gcapcPeaks.Rd:50: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/gcapcPeaks.Rd:52: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
peaksCAT html
read5endCoverage html
refinePeaks html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/refinePeaks.Rd:42: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/refinePeaks.Rd:45: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/refinePeaks.Rd:47: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
refineSites html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/refineSites.Rd:93: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/refineSites.Rd:96: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpG2zlsR/R.INSTALL2340377c4e9a/gcapc/man/refineSites.Rd:98: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gcapc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gcapc' as gcapc_1.14.0.zip
* DONE (gcapc)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'gcapc' successfully unpacked and MD5 sums checked