Caleb Lareau
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/diffloop |
| Branch: RELEASE_3_12 |
| Last Commit: df423a8 |
| Last Changed Date: 2020-10-27 11:14:27 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:30:57 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the diffloop package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 480/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| diffloop 1.18.0 (landing page) Caleb Lareau
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: diffloop |
| Version: 1.18.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:diffloop.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings diffloop_1.18.0.tar.gz |
| StartedAt: 2021-05-06 02:14:03 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 02:21:53 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 470.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: diffloop.Rcheck |
| Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:diffloop.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings diffloop_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/diffloop.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'diffloop/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'diffloop' version '1.18.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'diffloop' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop' See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/diffloop.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/diffloop.Rcheck/00check.log' for details.
diffloop.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/diffloop_1.18.0.tar.gz && rm -rf diffloop.buildbin-libdir && mkdir diffloop.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffloop.buildbin-libdir diffloop_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL diffloop_1.18.0.zip && rm diffloop_1.18.0.tar.gz diffloop_1.18.0.zip
###
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install for i386
* installing *source* package 'diffloop' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
** help
*** installing help indices
converting help for package 'diffloop'
finding HTML links ... done
addchr html
annotateAnchors html
annotateAnchors.bed html
annotateAnchors.bigwig html
annotateLoops html
annotateLoops.dge html
bedToGRanges html
calcLDSizeFactors html
callCCDs html
computeBoundaryScores html
diffloop html
dim-loops-method html
featureTest html
filterLoops html
filterSpanningLoops html
geneinfo html
getHumanGenes html
getHumanTSS html
getMouseGenes html
getMouseTSS html
head-loops-method html
human.genes html
interchromosomal html
intrachromosomal html
keepCTCFloops html
keepEPloops html
loopAssoc html
loopDistancePlot html
loopGenes html
loopMetrics html
loopPlot html
loopWidth html
loops-class html
loops.small html
loopsMake html
loopsMake.mango html
loopsSubset html
mangoCorrection html
manyLoopPlots html
mergeAnchors html
numAnchors html
numLoops html
padGRanges html
pcaPlot html
plotTopLoops html
quickAssoc html
quickAssocVoom html
removeRegion html
removeSelfLoops html
rmchr html
sampleNames-loops-method html
slidingWindowTest html
splitSamples html
sub-loops-numeric-numeric-missing-method
html
subsetLoops html
subsetRegion html
subsetRegionAB html
summary-loops-method html
tail-loops-method html
topLoops html
union-loops-loops-method html
updateLDGroups html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'diffloop' ...
** testing if installed package can be loaded
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
* MD5 sums
packaged installation of 'diffloop' as diffloop_1.18.0.zip
* DONE (diffloop)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'diffloop' successfully unpacked and MD5 sums checked
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diffloop.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(diffloop)
Warning message:
replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
>
> test_check("diffloop")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
15.90 1.29 19.01
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diffloop.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(diffloop)
Warning message:
replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
>
> test_check("diffloop")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
10.35 0.37 12.35
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diffloop.Rcheck/examples_i386/diffloop-Ex.timings
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diffloop.Rcheck/examples_x64/diffloop-Ex.timings
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