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BUILD BIN report for cosmiq on merida1

This page was generated on 2021-05-06 12:34:38 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the cosmiq package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 385/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cosmiq 1.24.0  (landing page)
David Fischer
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/cosmiq
Branch: RELEASE_3_12
Last Commit: e04ae98
Last Changed Date: 2020-10-27 10:57:00 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: cosmiq
Version: 1.24.0
Command: rm -rf cosmiq.buildbin-libdir && mkdir cosmiq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cosmiq_1.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cosmiq.buildbin-libdir
StartedAt: 2021-05-06 08:18:50 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 08:19:49 -0400 (Thu, 06 May 2021)
EllapsedTime: 58.8 seconds
RetCode: 0
Status:   OK  
PackageFile: cosmiq_1.24.0.tgz
PackageFileSize: 279.3 KiB

Command output

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###
### Running command:
###
###   rm -rf cosmiq.buildbin-libdir && mkdir cosmiq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cosmiq_1.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cosmiq.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cosmiq.buildbin-libdir cosmiq_1.24.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cosmiq’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c util.c -o util.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cosmiq.so util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/cosmiq.buildbin-libdir/00LOCK-cosmiq/00new/cosmiq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cosmiq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cosmiq.buildbin-libdir/cosmiq/libs/cosmiq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "cosmiq.buildbin-libdir/cosmiq/libs/cosmiq.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "cosmiq.buildbin-libdir/cosmiq/libs/cosmiq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "cosmiq.buildbin-libdir/cosmiq/libs/cosmiq.so"