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INSTALL report for celaref on tokay1

This page was generated on 2020-08-13 11:44:15 -0400 (Thu, 13 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE celaref PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 237/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
celaref 1.7.0
Sarah Williams
Snapshot Date: 2020-08-12 14:52:00 -0400 (Wed, 12 Aug 2020)
URL: https://git.bioconductor.org/packages/celaref
Branch: master
Last Commit: 03fcc15
Last Changed Date: 2020-04-27 15:18:36 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: celaref
Version: 1.7.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/celaref_1.7.0.tar.gz && rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celaref.buildbin-libdir celaref_1.7.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL celaref_1.7.0.zip && rm celaref_1.7.0.tar.gz celaref_1.7.0.zip
StartedAt: 2020-08-12 17:47:36 -0400 (Wed, 12 Aug 2020)
EndedAt: 2020-08-12 17:48:34 -0400 (Wed, 12 Aug 2020)
EllapsedTime: 58.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/celaref_1.7.0.tar.gz && rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celaref.buildbin-libdir celaref_1.7.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL celaref_1.7.0.zip && rm celaref_1.7.0.tar.gz celaref_1.7.0.zip
###
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install for i386

* installing *source* package 'celaref' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'celaref'
    finding HTML links ... done
    contrast_each_group_to_the_rest         html  
    contrast_each_group_to_the_rest_for_norm_ma_with_limma
                                            html  
    contrast_the_group_to_the_rest          html  
    contrast_the_group_to_the_rest_with_limma_for_microarray
                                            html  
    convert_se_gene_ids                     html  
    de_table.demo_query                     html  
    de_table.demo_ref                       html  
    demo_cell_info_table                    html  
    demo_counts_matrix                      html  
    demo_gene_info_table                    html  
    demo_microarray_expr                    html  
    demo_microarray_sample_sheet            html  
    demo_query_se                           html  
    demo_ref_se                             html  
    find_within_match_differences           html  
    get_counts_index                        html  
    get_inner_or_outer_ci                   html  
    get_limma_top_table_with_ci             html  
    get_matched_stepped_mwtest_res_table    html  
    get_ranking_and_test_results            html  
    get_rankstat_table                      html  
    get_reciprocal_matches                  html  
    get_stepped_pvals_str                   html  
    get_the_up_genes_for_all_possible_groups
                                            html  
    get_the_up_genes_for_group              html  
    get_vs_random_pval                      html  
    load_dataset_10Xdata                    html  
    load_se_from_tables                     html  
    make_ranking_violin_plot                html  
    make_ref_similarity_names               html  
    make_ref_similarity_names_for_group     html  
    run_pair_test_stats                     html  
    subset_cells_by_group                   html  
    subset_se_cells_for_group_test          html  
    trim_small_groups_and_low_expression_genes
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'celaref' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'celaref' as celaref_1.7.0.zip
* DONE (celaref)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'celaref' successfully unpacked and MD5 sums checked