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INSTALL report for blima on tokay1

This page was generated on 2020-10-30 12:11:01 -0400 (Fri, 30 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE blima PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 196/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
blima 1.24.0
Vojtěch Kulvait
Snapshot Date: 2020-10-29 14:45:49 -0400 (Thu, 29 Oct 2020)
URL: https://git.bioconductor.org/packages/blima
Branch: RELEASE_3_12
Last Commit: 9a0d605
Last Changed Date: 2020-10-27 10:56:49 -0400 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: blima
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/blima_1.24.0.tar.gz && rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=blima.buildbin-libdir blima_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL blima_1.24.0.zip && rm blima_1.24.0.tar.gz blima_1.24.0.zip
StartedAt: 2020-10-29 18:04:41 -0400 (Thu, 29 Oct 2020)
EndedAt: 2020-10-29 18:05:44 -0400 (Thu, 29 Oct 2020)
EllapsedTime: 62.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/blima_1.24.0.tar.gz && rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=blima.buildbin-libdir blima_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL blima_1.24.0.zip && rm blima_1.24.0.tar.gz blima_1.24.0.zip
###
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install for i386

* installing *source* package 'blima' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c interpolateSortedVector.cpp -o interpolateSortedVector.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/blima.buildbin-libdir/00LOCK-blima/00new/blima/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'blima'
    finding HTML links ... done
    aggregateAndPreprocess                  html  
    bacgroundCorrect                        html  
    bacgroundCorrectSingleArray             html  
    backgroundChannelSubtract               html  
    backgroundChannelSubtractSingleArray    html  
    blima-package                           html  
    channelExistsIntegrityWithLogicalVectorList
                                            html  
    checkIntegrity                          html  
    checkIntegrityLogical                   html  
    checkIntegrityOfListOfBeadLevelDataObjects
                                            html  
    checkIntegrityOfSingleBeadLevelDataObject
                                            html  
    chipArrayStatistics                     html  
    createSummarizedMatrix                  html  
    doAction                                html  
    doProbeTTests                           html  
    doTTests                                html  
    filterBg                                html  
    getNextVector                           html  
    initMeanDistribution                    html  
    insertColumn                            html  
    interpolateSortedVector                 html  
    interpolateSortedVectorRcpp_            html  
    log2TransformPositive                   html  
    meanDistribution                        html  
    nonParametricEstimator                  html  
    nonPositiveCorrect                      html  
    nonPositiveCorrectSingleArray           html  
    numberOfDistributionElements            html  
    performXieCorrection                    html  
    plotBackgroundImageAfterCorrection      html  
    plotBackgroundImageBeforeCorrection     html  
    quantileNormalize                       html  
    readToVector                            html  
    selectedChannelTransform                html  
    selectedChannelTransformSingleArray     html  
    singleArrayNormalize                    html  
    singleChannelExistsIntegrityWithLogicalVector
                                            html  
    singleCheckIntegrityLogicalVector       html  
    singleNumberOfDistributionElements      html  
    updateMeanDistribution                  html  
    varianceBeadStabilise                   html  
    varianceBeadStabiliseSingleArray        html  
    vstFromLumi                             html  
    writeBackgroundImages                   html  
    xieBacgroundCorrect                     html  
    xieBacgroundCorrectSingleArray          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'blima' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c interpolateSortedVector.cpp -o interpolateSortedVector.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/blima.buildbin-libdir/blima/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'blima' as blima_1.24.0.zip
* DONE (blima)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'blima' successfully unpacked and MD5 sums checked