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BUILD BIN report for beadarray on merida1

This page was generated on 2020-08-07 12:22:35 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE beadarray PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 126/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
beadarray 2.39.0
Mark Dunning
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/beadarray
Branch: master
Last Commit: bd82da3
Last Changed Date: 2020-04-27 14:12:51 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: beadarray
Version: 2.39.0
Command: rm -rf beadarray.buildbin-libdir && mkdir beadarray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh beadarray_2.39.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R beadarray.buildbin-libdir
StartedAt: 2020-08-07 05:59:07 -0400 (Fri, 07 Aug 2020)
EndedAt: 2020-08-07 06:00:08 -0400 (Fri, 07 Aug 2020)
EllapsedTime: 61.1 seconds
RetCode: 0
Status:  OK 
PackageFile: beadarray_2.39.0.tgz
PackageFileSize: 4.228 MiB

Command output

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### Running command:
###
###   rm -rf beadarray.buildbin-libdir && mkdir beadarray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh beadarray_2.39.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R beadarray.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=beadarray.buildbin-libdir beadarray_2.39.0.tar.gz'
>>>>>>> 

* installing *source* package ‘beadarray’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c BASH.c -o BASH.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c HULK.c -o HULK.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c determiningGridPositions.c -o determiningGridPositions.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c findAllOutliers.c -o findAllOutliers.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c imageProcessing.c -o imageProcessing.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o beadarray.so BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/beadarray.buildbin-libdir/00LOCK-beadarray/00new/beadarray/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (beadarray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR beadarray.buildbin-libdir/beadarray/libs/beadarray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "beadarray.buildbin-libdir/beadarray/libs/beadarray.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "beadarray.buildbin-libdir/beadarray/libs/beadarray.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "beadarray.buildbin-libdir/beadarray/libs/beadarray.so"