Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for basilisk on tokay1

This page was generated on 2020-08-11 11:49:58 -0400 (Tue, 11 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE basilisk PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 114/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basilisk 1.1.9
Aaron Lun
Snapshot Date: 2020-08-10 14:50:56 -0400 (Mon, 10 Aug 2020)
URL: https://git.bioconductor.org/packages/basilisk
Branch: master
Last Commit: 6818dce
Last Changed Date: 2020-07-17 16:35:06 -0400 (Fri, 17 Jul 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: basilisk
Version: 1.1.9
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:basilisk.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings basilisk_1.1.9.tar.gz
StartedAt: 2020-08-11 06:12:13 -0400 (Tue, 11 Aug 2020)
EndedAt: 2020-08-11 06:24:46 -0400 (Tue, 11 Aug 2020)
EllapsedTime: 752.8 seconds
RetCode: 0
Status:  OK  
CheckDir: basilisk.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:basilisk.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings basilisk_1.1.9.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck'
* using R version 4.0.2 (2020-06-22)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'basilisk/DESCRIPTION' ... OK
* this is package 'basilisk' version '1.1.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/example/.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'basilisk' can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
basiliskRun: no visible binding for global variable '.basilisk.fun'
basiliskRun: no visible binding for global variable '.basilisk.args'
Undefined global functions or variables:
  .basilisk.args .basilisk.fun
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
basiliskStart     0.60   0.33  189.25
setupBasiliskEnv  0.01   0.02   72.26
findPersistentEnv 0.02   0.00    6.66
listPackages      0.02   0.00   29.67
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/00check.log'
for details.



Installation output

basilisk.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch basilisk
###
##############################################################################
##############################################################################


* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
* installing *source* package 'basilisk' ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'basilisk'
    finding HTML links ... done
    BasiliskEnvironment-class               html  
    PyPiLink                                html  
    basiliskOptions                         html  
    basiliskStart                           html  
    configureBasiliskEnv                    html  
    findPersistentEnv                       html  
    listPackages                            html  
    finding level-2 HTML links ... done

    setupBasiliskEnv                        html  
    useBasiliskEnv                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (basilisk)
Making 'packages.html' ... done

Tests output

basilisk.Rcheck/tests/testthat.Rout


R version 4.0.2 (2020-06-22) -- "Taking Off Again"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(basilisk)
> test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo

  added / updated specs:
    - python=3.7.4


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/win-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/win-64::certifi-2020.6.20-py37hc8dfbb8_0
  openssl            conda-forge/win-64::openssl-1.1.1g-he774522_1
  pip                conda-forge/noarch::pip-20.2.1-py_0
  python             pkgs/main/win-64::python-3.7.4-h5263a28_0
  python_abi         conda-forge/win-64::python_abi-3.7-1_cp37m
  setuptools         conda-forge/win-64::setuptools-49.3.1-py37hc8dfbb8_0
  sqlite             conda-forge/win-64::sqlite-3.32.3-he774522_1
  vc                 conda-forge/win-64::vc-14.1-h869be7e_1
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py37_1003


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo

  added / updated specs:
    - pandas=0.25.1
    - python-dateutil=2.8.0
    - python=3.7.4
    - pytz=2019.3


The following NEW packages will be INSTALLED:

  intel-openmp       pkgs/main/win-64::intel-openmp-2020.1-216
  libblas            conda-forge/win-64::libblas-3.8.0-16_mkl
  libcblas           conda-forge/win-64::libcblas-3.8.0-16_mkl
  liblapack          conda-forge/win-64::liblapack-3.8.0-16_mkl
  mkl                pkgs/main/win-64::mkl-2020.1-216
  numpy              conda-forge/win-64::numpy-1.19.1-py37hae9e721_0
  pandas             conda-forge/win-64::pandas-0.25.1-py37he350917_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.0-py_0
  pytz               conda-forge/noarch::pytz-2019.3-py_0
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo

  added / updated specs:
    - python=3.7.4


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/win-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/win-64::certifi-2020.6.20-py37hc8dfbb8_0
  openssl            conda-forge/win-64::openssl-1.1.1g-he774522_1
  pip                conda-forge/noarch::pip-20.2.1-py_0
  python             pkgs/main/win-64::python-3.7.4-h5263a28_0
  python_abi         conda-forge/win-64::python_abi-3.7-1_cp37m
  setuptools         conda-forge/win-64::setuptools-49.3.1-py37hc8dfbb8_0
  sqlite             conda-forge/win-64::sqlite-3.32.3-he774522_1
  vc                 conda-forge/win-64::vc-14.1-h869be7e_1
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py37_1003


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo

  added / updated specs:
    - pandas=0.24.1
    - python-dateutil=2.7.1
    - python=3.7.4
    - pytz=2018.7


The following NEW packages will be INSTALLED:

  intel-openmp       pkgs/main/win-64::intel-openmp-2020.1-216
  libblas            conda-forge/win-64::libblas-3.8.0-16_mkl
  libcblas           conda-forge/win-64::libcblas-3.8.0-16_mkl
  liblapack          conda-forge/win-64::liblapack-3.8.0-16_mkl
  mkl                pkgs/main/win-64::mkl-2020.1-216
  numpy              conda-forge/win-64::numpy-1.19.1-py37hae9e721_0
  pandas             conda-forge/win-64::pandas-0.24.1-py37h6538335_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.7.1-py_0
  pytz               conda-forge/noarch::pytz-2018.7-py_0
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo

  added / updated specs:
    - python=2.7


The following NEW packages will be INSTALLED:

  certifi            conda-forge/win-64::certifi-2019.11.28-py27h8c360ce_1
  pip                conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
  python             conda-forge/win-64::python-2.7.15-h2880e7c_1011_cpython
  python_abi         conda-forge/win-64::python_abi-2.7-1_cp27m
  setuptools         conda-forge/win-64::setuptools-44.0.0-py27_0
  vc                 pkgs/main/win-64::vc-9-h7299396_1
  vs2008_runtime     conda-forge/win-64::vs2008_runtime-9.0.30729.6161-0
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py27_1003


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo

  added / updated specs:
    - python=3.7.4


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/win-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/win-64::certifi-2020.6.20-py37hc8dfbb8_0
  openssl            conda-forge/win-64::openssl-1.1.1g-he774522_1
  pip                conda-forge/noarch::pip-20.2.1-py_0
  python             pkgs/main/win-64::python-3.7.4-h5263a28_0
  python_abi         conda-forge/win-64::python_abi-3.7-1_cp37m
  setuptools         conda-forge/win-64::setuptools-49.3.1-py37hc8dfbb8_0
  sqlite             conda-forge/win-64::sqlite-3.32.3-he774522_1
  vc                 conda-forge/win-64::vc-14.1-h869be7e_1
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py37_1003


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo

  added / updated specs:
    - python-dateutil=2.7.1
    - python=3.7.4
    - pytz=2018.7


The following NEW packages will be INSTALLED:

  python-dateutil    conda-forge/noarch::python-dateutil-2.7.1-py_0
  pytz               conda-forge/noarch::pytz-2018.7-py_0
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==0.24.1
  Using cached pandas-0.24.1-cp37-cp37m-win_amd64.whl (9.0 MB)
Requirement already satisfied: pytz>=2011k in c:\users\biocbu~1\bbs-3~1.12-\meat\basili~1.rch\tests\testthat\instal~1\thingo\lib\site-packages (from pandas==0.24.1) (2018.7)
Requirement already satisfied: python-dateutil>=2.5.0 in c:\users\biocbu~1\bbs-3~1.12-\meat\basili~1.rch\tests\testthat\instal~1\thingo\lib\site-packages (from pandas==0.24.1) (2.7.1)
Collecting numpy>=1.12.0
  Using cached numpy-1.19.1-cp37-cp37m-win_amd64.whl (12.9 MB)
Requirement already satisfied: six>=1.5 in c:\users\biocbu~1\bbs-3~1.12-\meat\basili~1.rch\tests\testthat\instal~1\thingo\lib\site-packages (from python-dateutil>=2.5.0->pandas==0.24.1) (1.15.0)
Installing collected packages: numpy, pandas
  WARNING: The script f2py.exe is installed in 'C:\Users\BIOCBU~1\BBS-3~1.12-\meat\BASILI~1.RCH\tests\testthat\INSTAL~1\thingo\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed numpy-1.19.1 pandas-0.24.1
* installing *source* package 'son.of.basilisk' ...
** using non-staged installation via StagedInstall field
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'son.of.basilisk'
    finding HTML links ... done
    test                                    html  
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* DONE (son.of.basilisk)
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_A

  added / updated specs:
    - python=3.7.4


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/win-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/win-64::certifi-2020.6.20-py37hc8dfbb8_0
  openssl            conda-forge/win-64::openssl-1.1.1g-he774522_1
  pip                conda-forge/noarch::pip-20.2.1-py_0
  python             pkgs/main/win-64::python-3.7.4-h5263a28_0
  python_abi         conda-forge/win-64::python_abi-3.7-1_cp37m
  setuptools         conda-forge/win-64::setuptools-49.3.1-py37hc8dfbb8_0
  sqlite             conda-forge/win-64::sqlite-3.32.3-he774522_1
  vc                 conda-forge/win-64::vc-14.1-h869be7e_1
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py37_1003


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_A
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_A

  added / updated specs:
    - pandas=0.25.1
    - python-dateutil=2.8.0
    - python=3.7.4
    - pytz=2019.3


The following NEW packages will be INSTALLED:

  intel-openmp       pkgs/main/win-64::intel-openmp-2020.1-216
  libblas            conda-forge/win-64::libblas-3.8.0-16_mkl
  libcblas           conda-forge/win-64::libcblas-3.8.0-16_mkl
  liblapack          conda-forge/win-64::liblapack-3.8.0-16_mkl
  mkl                pkgs/main/win-64::mkl-2020.1-216
  numpy              conda-forge/win-64::numpy-1.19.1-py37hae9e721_0
  pandas             conda-forge/win-64::pandas-0.25.1-py37he350917_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.0-py_0
  pytz               conda-forge/noarch::pytz-2019.3-py_0
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_B

  added / updated specs:
    - python=3.7.4


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/win-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/win-64::certifi-2020.6.20-py37hc8dfbb8_0
  openssl            conda-forge/win-64::openssl-1.1.1g-he774522_1
  pip                conda-forge/noarch::pip-20.2.1-py_0
  python             pkgs/main/win-64::python-3.7.4-h5263a28_0
  python_abi         conda-forge/win-64::python_abi-3.7-1_cp37m
  setuptools         conda-forge/win-64::setuptools-49.3.1-py37hc8dfbb8_0
  sqlite             conda-forge/win-64::sqlite-3.32.3-he774522_1
  vc                 conda-forge/win-64::vc-14.1-h869be7e_1
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py37_1003


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_B
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.3

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: C:\Users\biocbuild\bbs-3.12-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_B

  added / updated specs:
    - pandas=0.24.1
    - python-dateutil=2.7.1
    - python=3.7.4
    - pytz=2018.7


The following NEW packages will be INSTALLED:

  intel-openmp       pkgs/main/win-64::intel-openmp-2020.1-216
  libblas            conda-forge/win-64::libblas-3.8.0-16_mkl
  libcblas           conda-forge/win-64::libcblas-3.8.0-16_mkl
  liblapack          conda-forge/win-64::liblapack-3.8.0-16_mkl
  mkl                pkgs/main/win-64::mkl-2020.1-216
  numpy              conda-forge/win-64::numpy-1.19.1-py37hae9e721_0
  pandas             conda-forge/win-64::pandas-0.24.1-py37h6538335_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.7.1-py_0
  pytz               conda-forge/noarch::pytz-2018.7-py_0
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
== testthat results  ===========================================================
[ OK: 48 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
   5.34    5.01  398.39 

Example timings

basilisk.Rcheck/basilisk-Ex.timings

nameusersystemelapsed
BasiliskEnvironment-class0.010.000.02
PyPiLink000
basiliskOptions000
basiliskStart 0.60 0.33189.25
configureBasiliskEnv000
findPersistentEnv0.020.006.66
listPackages 0.02 0.0029.67
setupBasiliskEnv 0.01 0.0272.26
useBasiliskEnv0.060.001.28