Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:26:56 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the bamsignals package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 113/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
bamsignals 1.22.0 (landing page) Johannes Helmuth
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: bamsignals |
Version: 1.22.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bamsignals |
StartedAt: 2021-05-05 16:46:15 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 16:46:43 -0400 (Wed, 05 May 2021) |
EllapsedTime: 28.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bamsignals ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘bamsignals’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include -fpic -g -O2 -Wall -c CountSignals.cpp -o CountSignals.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include -fpic -g -O2 -Wall -c bamsignals.cpp -o bamsignals.o bamsignals.cpp: In function ‘bool writeSamAsBamAndIndex(const string&, const string&)’: bamsignals.cpp:499:9: warning: variable ‘iorval’ set but not used [-Wunused-but-set-variable] int iorval; ^~~~~~ gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include -fpic -g -O2 -Wall -c bamsignals_init.c -o bamsignals_init.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o bamsignals.so CountSignals.o RcppExports.o bamsignals.o bamsignals_init.o /home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-bamsignals/00new/bamsignals/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bamsignals)