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INSTALL report for bamsignals on malbec1

This page was generated on 2021-05-06 12:26:56 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the bamsignals package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 113/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bamsignals 1.22.0  (landing page)
Johannes Helmuth
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/bamsignals
Branch: RELEASE_3_12
Last Commit: 5f53396
Last Changed Date: 2020-10-27 11:03:28 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: bamsignals
Version: 1.22.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bamsignals
StartedAt: 2021-05-05 16:46:15 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 16:46:43 -0400 (Wed, 05 May 2021)
EllapsedTime: 28.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bamsignals
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘bamsignals’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c CountSignals.cpp -o CountSignals.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c bamsignals.cpp -o bamsignals.o
bamsignals.cpp: In function ‘bool writeSamAsBamAndIndex(const string&, const string&)’:
bamsignals.cpp:499:9: warning: variable ‘iorval’ set but not used [-Wunused-but-set-variable]
     int iorval;
         ^~~~~~
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c bamsignals_init.c -o bamsignals_init.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o bamsignals.so CountSignals.o RcppExports.o bamsignals.o bamsignals_init.o /home/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-bamsignals/00new/bamsignals/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bamsignals)