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INSTALL report for altcdfenvs on tokay1

This page was generated on 2020-08-11 11:35:48 -0400 (Tue, 11 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE altcdfenvs PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 47/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
altcdfenvs 2.51.0
Laurent Gautier
Snapshot Date: 2020-08-10 14:50:56 -0400 (Mon, 10 Aug 2020)
URL: https://git.bioconductor.org/packages/altcdfenvs
Branch: master
Last Commit: ce94335
Last Changed Date: 2020-04-27 14:09:31 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: altcdfenvs
Version: 2.51.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/altcdfenvs_2.51.0.tar.gz && rm -rf altcdfenvs.buildbin-libdir && mkdir altcdfenvs.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=altcdfenvs.buildbin-libdir altcdfenvs_2.51.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL altcdfenvs_2.51.0.zip && rm altcdfenvs_2.51.0.tar.gz altcdfenvs_2.51.0.zip
StartedAt: 2020-08-10 17:57:54 -0400 (Mon, 10 Aug 2020)
EndedAt: 2020-08-10 17:58:42 -0400 (Mon, 10 Aug 2020)
EllapsedTime: 47.8 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/altcdfenvs_2.51.0.tar.gz && rm -rf altcdfenvs.buildbin-libdir && mkdir altcdfenvs.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=altcdfenvs.buildbin-libdir altcdfenvs_2.51.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL altcdfenvs_2.51.0.zip && rm altcdfenvs_2.51.0.tar.gz altcdfenvs_2.51.0.zip
###
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install for i386

* installing *source* package 'altcdfenvs' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
in method for 'toHypergraph' with signature '"CdfEnvAffy"': no definition for class "CdfEnvAffy"
** help
*** installing help indices
  converting help for package 'altcdfenvs'
    finding HTML links ... done
    AffyProbesMatch-class                   html  
    CdfEnvAffy-class                        html  
    appendCdfEnvAffy                        html  
    buildCdfEnv.biostrings                  html  
    cdfenv                                  html  
    cdfenvEx                                html  
    copyCdfEnvAffy                          html  
    countduplicated                         html  
    geneNames                               html  
    getxy.probeseq                          html  
    index2xy                                html  
    indexProbes.CdfEnvAffy                  html  
    matchAffyProbes                         html  
    plot.CdfEnvAffy                         html  
    removeIndex                             html  
    toHypergraph                            html  
    unique.CdfEnvAffy                       html  
    utils.FASTA                             html  
    validAffyBatch                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'altcdfenvs' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'altcdfenvs' as altcdfenvs_2.51.0.zip
* DONE (altcdfenvs)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'altcdfenvs' successfully unpacked and MD5 sums checked