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CHECK report for a4Classif on riesling1

This page was generated on 2020-10-24 11:04:22 -0400 (Sat, 24 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE a4Classif PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 3/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
a4Classif 1.37.1
Laure Cougnaud
Snapshot Date: 2020-10-23 14:40:36 -0400 (Fri, 23 Oct 2020)
URL: https://git.bioconductor.org/packages/a4Classif
Branch: master
Last Commit: e6a807c
Last Changed Date: 2020-10-23 11:28:22 -0400 (Fri, 23 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK YES, new version is higher than in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ] OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: a4Classif
Version: 1.37.1
Command: D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:a4Classif.install-out.txt --library=D:\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings a4Classif_1.37.1.tar.gz
StartedAt: 2020-10-24 01:36:02 -0400 (Sat, 24 Oct 2020)
EndedAt: 2020-10-24 01:37:32 -0400 (Sat, 24 Oct 2020)
EllapsedTime: 90.5 seconds
RetCode: 0
Status:  OK  
CheckDir: a4Classif.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:a4Classif.install-out.txt --library=D:\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings a4Classif_1.37.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.12-bioc/meat/a4Classif.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'a4Classif/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4Classif' version '1.37.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'a4Classif' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'a4Preproc'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
rfClass 5.42   0.06     5.5
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
rfClass 7.12   0.11    7.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.12-bioc/meat/a4Classif.Rcheck/00check.log'
for details.



Installation output

a4Classif.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/a4Classif_1.37.1.tar.gz && rm -rf a4Classif.buildbin-libdir && mkdir a4Classif.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=a4Classif.buildbin-libdir a4Classif_1.37.1.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL a4Classif_1.37.1.zip && rm a4Classif_1.37.1.tar.gz a4Classif_1.37.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  7881  100  7881    0     0   405k      0 --:--:-- --:--:-- --:--:--  405k

install for i386

* installing *source* package 'a4Classif' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'a4Classif'
    finding HTML links ... done
    ROCcurve                                html  
    lassoClass                              html  
    pamClass                                html  
    rfClass                                 html  
    topTable-pamClass-method                html  
    topTable-rfClass-method                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'a4Classif' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Classif' as a4Classif_1.37.1.zip
* DONE (a4Classif)
* installing to library 'D:/biocbuild/bbs-3.12-bioc/R/library'
package 'a4Classif' successfully unpacked and MD5 sums checked

Tests output


Example timings

a4Classif.Rcheck/examples_i386/a4Classif-Ex.timings

nameusersystemelapsed
ROCcurve0.070.000.06
lassoClass3.700.133.86
pamClass3.920.364.28
rfClass5.420.065.50

a4Classif.Rcheck/examples_x64/a4Classif-Ex.timings

nameusersystemelapsed
ROCcurve0.110.000.11
lassoClass4.420.204.64
pamClass4.520.424.95
rfClass7.120.117.23