| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:20 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the Roleswitch package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1565/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Yue Li
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: Roleswitch |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/Roleswitch_1.28.0.tar.gz && rm -rf Roleswitch.buildbin-libdir && mkdir Roleswitch.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Roleswitch.buildbin-libdir Roleswitch_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL Roleswitch_1.28.0.zip && rm Roleswitch_1.28.0.tar.gz Roleswitch_1.28.0.zip |
| StartedAt: 2021-05-05 17:17:10 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:17:53 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 42.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/Roleswitch_1.28.0.tar.gz && rm -rf Roleswitch.buildbin-libdir && mkdir Roleswitch.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Roleswitch.buildbin-libdir Roleswitch_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL Roleswitch_1.28.0.zip && rm Roleswitch_1.28.0.tar.gz Roleswitch_1.28.0.zip
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install for i386
* installing *source* package 'Roleswitch' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Roleswitch'
finding HTML links ... done
Roleswitch-package html
diagnosticPlot html
getSeedMatrix html
roleswitch html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw1htBr/R.INSTALL1a0047976697/Roleswitch/man/roleswitch.Rd:42: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw1htBr/R.INSTALL1a0047976697/Roleswitch/man/roleswitch.Rd:42: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw1htBr/R.INSTALL1a0047976697/Roleswitch/man/roleswitch.Rd:45: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
tcga_gbm_testdata html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'Roleswitch' is deprecated and will be removed from
Bioconductor version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'Roleswitch' is deprecated and will be removed from
Bioconductor version 3.13
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Roleswitch' ...
** testing if installed package can be loaded
Warning: Package 'Roleswitch' is deprecated and will be removed from
Bioconductor version 3.13
* MD5 sums
packaged installation of 'Roleswitch' as Roleswitch_1.28.0.zip
* DONE (Roleswitch)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'Roleswitch' successfully unpacked and MD5 sums checked