Daoud Sie
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/QDNAseq |
| Branch: RELEASE_3_12 |
| Last Commit: 312b6c8 |
| Last Changed Date: 2020-10-27 10:55:28 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:57 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the QDNAseq package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1423/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| QDNAseq 1.26.0 (landing page) Daoud Sie
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: QDNAseq |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/QDNAseq_1.26.0.tar.gz && rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QDNAseq.buildbin-libdir QDNAseq_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL QDNAseq_1.26.0.zip && rm QDNAseq_1.26.0.tar.gz QDNAseq_1.26.0.zip |
| StartedAt: 2021-05-05 17:38:33 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:39:16 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 42.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/QDNAseq_1.26.0.tar.gz && rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QDNAseq.buildbin-libdir QDNAseq_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL QDNAseq_1.26.0.zip && rm QDNAseq_1.26.0.tar.gz QDNAseq_1.26.0.zip
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install for i386
* installing *source* package 'QDNAseq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'QDNAseq'
finding HTML links ... done
LGG150 html
QDNAseq-defunct html
QDNAseq-package html
QDNAseqCopyNumbers html
QDNAseqReadCounts html
QDNAseqSignals html
addPhenodata html
applyFilters html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/applyFilters.Rd:31: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
binReadCounts html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/binReadCounts.Rd:29: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
callBins html
compareToReference html
correctBins html
createBins html
estimateCorrection html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/estimateCorrection.Rd:43: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
exportBins html
finding level-2 HTML links ... done
frequencyPlot html
getBinAnnotations html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/getBinAnnotations.Rd:48: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
highlightFilters html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/highlightFilters.Rd:32: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
isobarPlot html
makeCgh html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/makeCgh.Rd:37: file link 'cghRaw' in package 'CGHbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/makeCgh.Rd:38: file link 'cghSeg' in package 'CGHbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/makeCgh.Rd:39: file link 'cghCall' in package 'CGHbase' does not exist and so has been treated as a topic
noisePlot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6fHl92/R.INSTALL1aac6a032cd7/QDNAseq/man/noisePlot.Rd:28: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
normalizeBins html
normalizeSegmentedBins html
plot html
poolRuns html
segmentBins html
smoothOutlierBins html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'QDNAseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QDNAseq' as QDNAseq_1.26.0.zip
* DONE (QDNAseq)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'QDNAseq' successfully unpacked and MD5 sums checked