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BUILD BIN report for PING on merida1

This page was generated on 2021-01-19 11:58:07 -0500 (Tue, 19 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE PING PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1350/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PING 2.34.0
Renan Sauteraud
Snapshot Date: 2021-01-18 14:42:24 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/PING
Branch: RELEASE_3_12
Last Commit: e862317
Last Changed Date: 2020-10-27 10:44:58 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: PING
Version: 2.34.0
Command: rm -rf PING.buildbin-libdir && mkdir PING.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PING_2.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PING.buildbin-libdir
StartedAt: 2021-01-19 09:41:02 -0500 (Tue, 19 Jan 2021)
EndedAt: 2021-01-19 09:43:19 -0500 (Tue, 19 Jan 2021)
EllapsedTime: 136.2 seconds
RetCode: 0
Status:  OK 
PackageFile: PING_2.34.0.tgz
PackageFileSize: 5.614 MiB

Command output

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###
### Running command:
###
###   rm -rf PING.buildbin-libdir && mkdir PING.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PING_2.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PING.buildbin-libdir
###
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##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PING.buildbin-libdir PING_2.34.0.tar.gz'
>>>>>>> 

* installing *source* package ‘PING’ ...
** using staged installation
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ping.c -o ping.o
ping.c:321:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
      if(abs(REAL(yF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha)
         ^
ping.c:321:10: note: use function 'fabs' instead
      if(abs(REAL(yF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha)
         ^~~
         fabs
ping.c:329:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
      if(abs(REAL(yR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha)
         ^
ping.c:329:10: note: use function 'fabs' instead
      if(abs(REAL(yR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha)
         ^~~
         fabs
ping.c:345:12: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
        if(abs(REAL(cF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha)
           ^
ping.c:345:12: note: use function 'fabs' instead
        if(abs(REAL(cF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha)
           ^~~
           fabs
ping.c:353:12: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
        if(abs(REAL(cR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha)
           ^
ping.c:353:12: note: use function 'fabs' instead
        if(abs(REAL(cR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha)
           ^~~
           fabs
4 warnings generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PING.so init.o ping.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/PING.buildbin-libdir/00LOCK-PING/00new/PING/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PING)


>>>>>>> 
>>>>>>> FIXING LINKS FOR PING.buildbin-libdir/PING/libs/PING.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "PING.buildbin-libdir/PING/libs/PING.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "PING.buildbin-libdir/PING/libs/PING.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "PING.buildbin-libdir/PING/libs/PING.so"