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BUILD BIN report for NuPoP on merida1

This page was generated on 2021-05-06 12:35:58 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the NuPoP package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1241/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NuPoP 1.40.0  (landing page)
Ji-Ping Wang
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/NuPoP
Branch: RELEASE_3_12
Last Commit: b53c2c5
Last Changed Date: 2020-10-27 10:38:57 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: NuPoP
Version: 1.40.0
Command: rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NuPoP.buildbin-libdir
StartedAt: 2021-05-06 09:25:50 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:26:48 -0400 (Thu, 06 May 2021)
EllapsedTime: 57.5 seconds
RetCode: 0
Status:   OK  
PackageFile: NuPoP_1.40.0.tgz
PackageFileSize: 1.99 MiB

Command output

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###
### Running command:
###
###   rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NuPoP.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NuPoP.buildbin-libdir NuPoP_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package ‘NuPoP’ ...
** using staged installation
** libs
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  vtbfb.f90 -o vtbfb.o
vtbfb.f90:13:32:

   character*80 seqName,out1,out2; character*2 tpc
                                1
Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable]
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  vtbfbNL4.f90 -o vtbfbNL4.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NuPoP.so vtbfb.o vtbfbNL4.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/NuPoP.buildbin-libdir/00LOCK-NuPoP/00new/NuPoP/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NuPoP)


>>>>>>> 
>>>>>>> FIXING LINKS FOR NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so"