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INSTALL report for MinimumDistance on tokay1

This page was generated on 2021-05-06 12:32:16 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the MinimumDistance package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1104/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MinimumDistance 1.34.0  (landing page)
Robert Scharpf
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/MinimumDistance
Branch: RELEASE_3_12
Last Commit: 50ebfdd
Last Changed Date: 2020-10-27 10:45:43 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: MinimumDistance
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MinimumDistance_1.34.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.34.0.zip && rm MinimumDistance_1.34.0.tar.gz MinimumDistance_1.34.0.zip
StartedAt: 2021-05-05 18:30:14 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:32:46 -0400 (Wed, 05 May 2021)
EllapsedTime: 151.8 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MinimumDistance_1.34.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.34.0.zip && rm MinimumDistance_1.34.0.tar.gz MinimumDistance_1.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  928k  100  928k    0     0  38.5M      0 --:--:-- --:--:-- --:--:-- 41.2M

install for i386

* installing *source* package 'MinimumDistance' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Creating a new generic function for 'allNames' in package 'MinimumDistance'
in method for 'coerce' with signature '"RangedDataCNV","GRanges"': no definition for class "RangedDataCNV"
in method for 'todf' with signature 'object="TrioSet",rangeData="RangedData"': no definition for class "RangedData"
in method for 'prune' with signature 'object="TrioSet",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
in method for 'prune' with signature 'object="TrioSetList",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
** help
*** installing help indices
  converting help for package 'MinimumDistance'
    finding HTML links ... done
    DNAcopyParam                            html  
    Defunct                                 html  
    Deprecated                              html  
    FilterParamMD-class                     html  
    FilterParamMD                           html  
    MAP                                     html  
    MAP2                                    html  
    MDRanges-class                          html  
    MinDistExperiment-class                 html  
    MinDistExperiment                       html  
    MinDistGRanges-class                    html  
    MinDistGRanges                          html  
    MinDistParam-class                      html  
    MinDistParam                            html  
    MinDistPosterior-class                  html  
    MinimumDistance                         html  
    ParentOffspring-class                   html  
    ParentOffspringList-class               html  
    Pedigree-class                          html  
    Pedigree                                html  
    PennParam                               html  
    TrioSet-class                           html  
    TrioSet                                 html  
    TrioSetList-class                       html  
    TrioSetList                             html  
    TrioSetListLD                           html  
    acf2                                    html  
    calculateMindist                        html  
    coercion-methods                        html  
    denovo                                  html  
    exampleTrioSetList                      html  
    filterExperiment                        html  
    mad2                                    html  
    mdLegend                                html  
    md_exp                                  html  
    md_gr                                   html  
    mindist                                 html  
    nMAD                                    html  
    pedigreeGrid                            html  
    pedigreeName                            html  
    pedigreeViewports                       html  
    plotDenovo                              html  
    range-ILimit-method                     html  
    segment2                                html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MinimumDistance' ...
** testing if installed package can be loaded
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
* MD5 sums
packaged installation of 'MinimumDistance' as MinimumDistance_1.34.0.zip
* DONE (MinimumDistance)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MinimumDistance' successfully unpacked and MD5 sums checked