Sunny Jones
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/MOMA |
| Branch: RELEASE_3_12 |
| Last Commit: 4a9d5ef |
| Last Changed Date: 2020-10-27 11:56:36 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:19 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the MOMA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1137/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MOMA 1.2.0 (landing page) Sunny Jones
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MOMA |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MOMA.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MOMA_1.2.0.tar.gz |
| StartedAt: 2021-05-06 04:47:31 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:52:07 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 275.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MOMA.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MOMA.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MOMA_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/MOMA.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MOMA/DESCRIPTION' ... OK
* this is package 'MOMA' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MOMA' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 4.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.12-bioc/meat/MOMA.Rcheck/00check.log'
for details.
MOMA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MOMA_1.2.0.tar.gz && rm -rf MOMA.buildbin-libdir && mkdir MOMA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MOMA.buildbin-libdir MOMA_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MOMA_1.2.0.zip && rm MOMA_1.2.0.tar.gz MOMA_1.2.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 4069k 100 4069k 0 0 57.0M 0 --:--:-- --:--:-- --:--:-- 57.5M
install for i386
* installing *source* package 'MOMA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MOMA'
finding HTML links ... done
Moma-class html
areaEnrich html
associateEvents html
checkGeneMap html
checkList html
checkMAE html
checkPathways html
clusterRange html
clusterReliability html
cnvScoreStouffer html
conditionalModel html
conditionalP html
empiricalP html
example.gbm.mae html
fitCurvePercent html
gbm.pathways html
gene.map html
genomicPlotSmall html
getCoverage html
getDataFrame html
getDiggitEmpiricalQvalues html
getEmpiricalQvals html
getPvalsMatrix html
getSubtypeEventTables html
integrateFunction html
integrateTZ html
makeCoverageDf html
makeSaturationPlots html
mapEntrez html
mapHugo html
mapScoresCnvBand html
mergeData html
mergeDataBySubtype html
mergeGenomicSaturation html
mergeLists html
momaConstructor html
mutSig html
oncoprintPlot html
pathwayDiggitIntersect html
plotEvents html
rea html
reaNULL html
sREA html
sampleNameFilter html
sampleOverlap html
sigInteractorsDIGGIT html
stoufferIntegrate html
stoufferIntegrateDiggit html
subsetListInteractions html
validDiggitInteractions html
viperGetSigTFS html
viperGetTFScores html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MOMA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MOMA' as MOMA_1.2.0.zip
* DONE (MOMA)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MOMA' successfully unpacked and MD5 sums checked
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MOMA.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(MOMA)
>
> test_check("MOMA")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
9.85 0.60 10.45
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MOMA.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(MOMA)
>
> test_check("MOMA")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
11.23 0.45 11.67
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MOMA.Rcheck/examples_i386/MOMA-Ex.timings
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MOMA.Rcheck/examples_x64/MOMA-Ex.timings
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