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BUILD BIN report for Harshlight on tokay1

This page was generated on 2021-05-06 12:31:44 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the Harshlight package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 815/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Harshlight 1.62.0  (landing page)
Maurizio Pellegrino
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/Harshlight
Branch: RELEASE_3_12
Last Commit: bb58d1c
Last Changed Date: 2020-10-27 10:29:01 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: Harshlight
Version: 1.62.0
Command: rm -rf Harshlight.buildbin-libdir && mkdir Harshlight.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harshlight.buildbin-libdir Harshlight_1.62.0.tar.gz
StartedAt: 2021-05-06 09:16:00 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:16:30 -0400 (Thu, 06 May 2021)
EllapsedTime: 30.2 seconds
RetCode: 0
Status:   OK   
PackageFile: Harshlight_1.62.0.zip
PackageFileSize: 252.7 KiB

Command output

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### Running command:
###
###   rm -rf Harshlight.buildbin-libdir && mkdir Harshlight.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harshlight.buildbin-libdir Harshlight_1.62.0.tar.gz
###
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install for i386

* installing *source* package 'Harshlight' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'extended_defects':
Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable]
   int num_points, *p_num_points; //number of points inside the median kernel
                    ^~~~~~~~~~~~
Harshlight.c: In function 'image_dilation':
Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable]
   double cell_value;
          ^~~~~~~~~~
Harshlight.c: In function 'norm':
Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable]
   double *sorted; double *sorted2;
                           ^~~~~~~
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
                          ^
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
                          ^
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
                          ^
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
                          ^
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/Harshlight.buildbin-libdir/00LOCK-Harshlight/00new/Harshlight/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Harshlight'
    finding HTML links ... done
    HarshComp                               html  
    HarshExt                                html  
    Harshlight                              html  
    sim                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Harshlight' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'extended_defects':
Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable]
   int num_points, *p_num_points; //number of points inside the median kernel
                    ^~~~~~~~~~~~
Harshlight.c: In function 'image_dilation':
Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable]
   double cell_value;
          ^~~~~~~~~~
Harshlight.c: In function 'norm':
Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable]
   double *sorted; double *sorted2;
                           ^~~~~~~
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
                          ^
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
                          ^
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
                          ^
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
                          ^
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/Harshlight.buildbin-libdir/Harshlight/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Harshlight' as Harshlight_1.62.0.zip
* DONE (Harshlight)