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INSTALL report for HMMcopy on malbec1

This page was generated on 2021-05-06 12:27:53 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the HMMcopy package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 844/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HMMcopy 1.32.0  (landing page)
Daniel Lai , Sohrab Shah
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/HMMcopy
Branch: RELEASE_3_12
Last Commit: ba30e1f
Last Changed Date: 2020-10-27 10:47:39 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: HMMcopy
Version: 1.32.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL HMMcopy
StartedAt: 2021-05-05 16:04:07 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 16:04:10 -0400 (Wed, 05 May 2021)
EllapsedTime: 3.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL HMMcopy
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘HMMcopy’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c forward_backward.c -o forward_backward.o
forward_backward.c: In function ‘forward_backward’:
forward_backward.c:28:13: warning: unused variable ‘tmp’ [-Wunused-variable]
   int K, T, tmp;
             ^~~
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c register.c -o register.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c viterbi.c -o viterbi.o
viterbi.c: In function ‘viterbi’:
viterbi.c:21:13: warning: unused variable ‘tmp’ [-Wunused-variable]
   int K, T, tmp;
             ^~~
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o HMMcopy.so forward_backward.o register.o viterbi.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-HMMcopy/00new/HMMcopy/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HMMcopy)