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INSTALL report for GenomicInteractions on tokay1

This page was generated on 2021-05-06 12:31:28 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the GenomicInteractions package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 718/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicInteractions 1.24.0  (landing page)
Liz Ing-Simmons
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/GenomicInteractions
Branch: RELEASE_3_12
Last Commit: 014f226
Last Changed Date: 2020-10-27 10:59:15 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: GenomicInteractions
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicInteractions_1.24.0.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.24.0.zip && rm GenomicInteractions_1.24.0.tar.gz GenomicInteractions_1.24.0.zip
StartedAt: 2021-05-05 18:30:00 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:32:43 -0400 (Wed, 05 May 2021)
EllapsedTime: 162.9 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicInteractions_1.24.0.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.24.0.zip && rm GenomicInteractions_1.24.0.tar.gz GenomicInteractions_1.24.0.zip
###
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100 3316k  100 3316k    0     0  50.7M      0 --:--:-- --:--:-- --:--:-- 51.4M

install for i386

* installing *source* package 'GenomicInteractions' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicInteractions'
    finding HTML links ... done
    GInteractions-subsetByFeatures-methods
                                            html  
    GenomicInteractions-class               html  
    GenomicInteractions-package             html  
    GenomicInteractions                     html  
    InteractionHelpers                      html  
    InteractionTrack-class                  html  
    InteractionTrack                        html  
    annotateInteractions                    html  
    annotateRegions                         html  
    asBED-GInteractions-method              html  
    availableDisplayPars                    html  
    calculateDistances                      html  
    categoriseInteractions                  html  
    countsBetweenAnchors-methods            html  
    dot-importHicLib                        html  
    dot-importHomer                         html  
    dot-processChiapetName                  html  
    dot-readBam                             html  
    dot-readTwoBams                         html  
    dot-validateInput                       html  
    export.bed12                            html  
    export.bedpe                            html  
    export.chiasig                          html  
    export.igraph                           html  
    get_binom_ligation_threshold            html  
    get_self_ligation_threshold             html  
    getters                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpauB5AR/R.INSTALL273c7bb24016/GenomicInteractions/man/getters.Rd:43: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    hg19.refseq.transcripts                 html  
    hic_example_data                        html  
    makeGenomicInteractionsFromFile         html  
    mm9_refseq_promoters                    html  
    plotAvgViewpoint                        html  
    plotCisTrans                            html  
    plotCounts                              html  
    plotDists                               html  
    plotInteractionAnnotations              html  
    plotSummaryStats                        html  
    plotViewpoint                           html  
    removeDups                              html  
    resetAnnotations                        html  
    sameStrand                              html  
    setters                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpauB5AR/R.INSTALL273c7bb24016/GenomicInteractions/man/setters.Rd:27: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    sum-GInteractions-method                html  
    summariseByFeaturePairs                 html  
    summariseByFeatures                     html  
    thymus_enh                              html  
    updateObject-GenomicInteractions-method
                                            html  
    viewPoint                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomicInteractions' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicInteractions' as GenomicInteractions_1.24.0.zip
* DONE (GenomicInteractions)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'GenomicInteractions' successfully unpacked and MD5 sums checked