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BUILD BIN report for ExpressionView on tokay1

This page was generated on 2021-05-06 12:31:05 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the ExpressionView package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 584/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExpressionView 1.42.0  (landing page)
Gabor Csardi
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/ExpressionView
Branch: RELEASE_3_12
Last Commit: 5f05898
Last Changed Date: 2020-10-27 10:37:55 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: ExpressionView
Version: 1.42.0
Command: rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.42.0.tar.gz
StartedAt: 2021-05-06 09:02:42 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:04:14 -0400 (Thu, 06 May 2021)
EllapsedTime: 91.6 seconds
RetCode: 0
Status:   OK   
PackageFile: ExpressionView_1.42.0.zip
PackageFileSize: 1.551 MiB

Command output

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### Running command:
###
###   rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.42.0.tar.gz
###
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install for i386

* installing *source* package 'ExpressionView' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c order.cpp -o order.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c orderclusters.cpp -o orderclusters.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/ExpressionView.buildbin-libdir/00LOCK-ExpressionView/00new/ExpressionView/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12 
in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
** help
*** installing help indices
  converting help for package 'ExpressionView'
    finding HTML links ... done
    ExportEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/ExportEV.Rd:25: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/ExportEV.Rd:28: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/ExportEV.Rd:67: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/ExportEV.Rd:73: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    ExpressionView-package                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/ExpressionView-package.Rd:17: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/ExpressionView-package.Rd:20: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/ExpressionView-package.Rd:44: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    LaunchEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/LaunchEV.Rd:19: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    OrderEV                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/OrderEV.Rd:20: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuqUUPM/R.INSTALL398c1bf92cc1/ExpressionView/man/OrderEV.Rd:61: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ExpressionView' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c order.cpp -o order.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c orderclusters.cpp -o orderclusters.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/x64
** testing if installed package can be loaded
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'ExpressionView' as ExpressionView_1.42.0.zip
* DONE (ExpressionView)